RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA758088" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 4 ✖

bioproject 1

  • PRJNA758088 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27369382 27369382 PRJNA758088_P_NODE_314143_length_247_cov_0.885057_g307172_i0 PRJNA758088 314143 247 0.885057 2.18609079 Methanobacteriota archaeon 2026739 Archaea Archaea 56.6 4.67e-7   NR MAH97924.1 2026739 g307172 i0 33.3 0.874493927125506 72 48 87.4 0 31 246 189 260 MAH97924.1 hypothetical protein [Methanobacteriota archaeon] diamond 216 56.6 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
27590266 27590266 PRJNA758088_P_NODE_218824_length_288_cov_1.116279_g211853_i0 PRJNA758088 218824 288 1.116279 3.21488352 Methanobrevibacter sp. 66852 Archaea Archaea 99.4 3.0799999999999994e-24   NR WP_407454095.1 66852 g211853 i0 92.2 1.03125 51 4 53.1 0 155 3 1 51 WP_407454095.1 hypothetical protein [Methanobrevibacter sp.] diamond 297 99.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27874248 27874248 PRJNA758088_P_NODE_345745_length_243_cov_0.905882_g338774_i0 PRJNA758088 345745 243 0.905882 2.20129326 Methanocorpusculum sp. 2058474 Archaea Archaea 155 1.87e-45   NR HJJ69380.1 2058474 g338774 i0 100 0.987654320987654 80 0 98.8 0 242 3 43 122 HJJ69380.1 hypothetical protein [Methanocorpusculum sp.] diamond 240 155 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
28199582 28199582 PRJNA758088_P_NODE_321906_length_246_cov_0.890173_g314935_i0 PRJNA758088 321906 246 0.890173 2.18982558 Methanosarcina 2207 Archaea Archaea 140 5.8e-39   NR WP_229390002.1 2605639 g314935 i0 87.8 3 82 10 100 0 1 246 90 171 WP_229390002.1 YihY/virulence factor BrkB family protein [Methanosarcina sp. DH2] diamond 738 141 0.99290780141844 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. DH2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;