RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA758087" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJNA758087 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30179213 30179213 PRJNA758087_P_NODE_17972_length_669_cov_14.557047_g16689_i0 PRJNA758087 17972 669 14.557047 97.38664443 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 368 1.57e-127   NR MBD0359671.1 2169593 g16689 i0 97.3 0.820627802690583 183 5 82.1 0 644 96 24 206 MBD0359671.1 imidazole glycerol phosphate synthase subunit HisH [Nitrososphaeraceae archaeon] diamond 549 368 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
32519323 32519323 PRJNA758087_P_NODE_26099_length_480_cov_11.498771_g24779_i0 PRJNA758087 26099 480 11.498771 55.1941008 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 135 1.16e-38   NR HSF00819.1 2169593 g24779 i0 100 0.38125 61 0 38.1 0 207 389 1 61 HSF00819.1 hypothetical protein [Nitrososphaeraceae archaeon] diamond 183 135 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
32834104 32834104 PRJNA758087_P_NODE_26760_length_468_cov_1.637975_g25440_i0 PRJNA758087 26760 468 1.637975 7.665723 Nitrososphaera sp. 1971748 Archaea Archaea 244 3.3000000000000003e-78   NR HEU0143943.1 1971748 g25440 i0 81.4 0.92948717948718 145 27 92.9 0 33 467 52 196 HEU0143943.1 transposase [Nitrososphaera sp.] diamond 435 244 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;