RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA758087" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA758087 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27748172 27748172 PRJNA758087_P_NODE_39424_length_280_cov_1.115942_g38104_i0 PRJNA758087 39424 280 1.115942 3.1246376 Monodon monoceros 40151 Chordata Chordata 48.9 3.82e-4   NR XP_029065241.1 40151 g38104 i0 54.8 0.45 42 19 45 0 161 36 18 59 XP_029065241.1 LOW QUALITY PROTEIN: zona pellucida sperm-binding protein 1 [Monodon monoceros] diamond 126 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Monodontidae Monodon Monodon monoceros
27842490 27842490 PRJNA758087_P_NODE_40744_length_262_cov_2.809524_g39424_i0 PRJNA758087 40744 262 2.809524 7.36095288 Phyllostomus discolor 89673 Chordata Chordata 44.7 0.00581   NR KAF6119919.1 89673 g39424 i0 42.9 1.04198473282443 91 43 99.6 4 262 2 37 122 KAF6119919.1 hypothetical protein HJG60_010298 [Phyllostomus discolor] diamond 273 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor
29168956 29168956 PRJNA758087_P_NODE_43809_length_239_cov_2.759036_g42489_i0 PRJNA758087 43809 239 2.759036 6.59409604 Monodon monoceros 40151 Chordata Chordata 43.9 0.0144   NR TKC47074.1 40151 g42489 i0 55.9 0.426778242677824 34 15 42.7 0 177 76 3296 3329 TKC47074.1 hypothetical protein EI555_021570, partial [Monodon monoceros] diamond 102 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Monodontidae Monodon Monodon monoceros
29295053 29295053 PRJNA758087_P_NODE_39489_length_279_cov_1.427184_g38169_i0 PRJNA758087 39489 279 1.427184 3.98184336 Branchiostoma floridae 7739 Chordata Chordata 44.3 0.00789   NR XP_035667307.1 7739 g38169 i0 38 0.537634408602151 50 31 53.8 0 115 264 99 148 XP_035667307.1 ankycorbin-like [Branchiostoma floridae] diamond 150 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
30179217 30179217 PRJNA758087_P_NODE_24672_length_509_cov_2.119266_g23352_i0 PRJNA758087 24672 509 2.119266 10.78706394 Trichechus manatus latirostris 127582 Chordata Chordata 68.6 4.94e-10   NR XP_023593449.1 127582 g23352 i0 57.6 0.388998035363458 66 26 37.7 2 508 317 324 389 XP_023593449.1 tumor susceptibility gene 101 protein isoform X2 [Trichechus manatus latirostris] diamond 198 68.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Sirenia Trichechidae Trichechus Trichechus manatus
32085861 32085861 PRJNA758087_P_NODE_40618_length_264_cov_3.047120_g39298_i0 PRJNA758087 40618 264 3.04712 8.0443968 Chiroptera 9397 Chordata Chordata 43.1 0.0369   NR ELK13967.1 9402 g39298 i0 33.3 1.56818181818182 69 32 75 2 261 64 861 918 ELK13967.1 Disintegrin and metalloproteinase domain-containing protein 17 [Pteropus alecto] diamond 414 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus alecto
32465776 32465776 PRJNA758087_P_NODE_35079_length_335_cov_2.729008_g33759_i0 PRJNA758087 35079 335 2.729008 9.1421768 root 1 Root_unresolved Root_unresolved 76.6 1.13e-13   NR XP_032458646.1 42100 g33759 i0 58.8 1.8 68 28 60.9 0 331 128 205 272 XP_032458646.1 ras-related protein Rab-31 isoform X1 [Phocoena sinus] diamond 603 76.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Phocoenidae Phocoena Phocoena sinus
32896949 32896949 PRJNA758087_P_NODE_31420_length_389_cov_1.743671_g30100_i0 PRJNA758087 31420 389 1.743671 6.78288019 Pleurodeles waltl 8319 Chordata Chordata 43.9 0.0262   NR KAJ1120134.1 8319 g30100 i0 40.4 0.401028277634961 52 24 34.7 1 164 298 68 119 KAJ1120134.1 hypothetical protein NDU88_008309 [Pleurodeles waltl] diamond 156 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;