RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA757618" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA757618 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27115946 27115946 PRJNA757618_P_NODE_39002_length_246_cov_0.901734_g37950_i0 PRJNA757618 39002 246 0.901734 2.21826564 Coccomyxa subellipsoidea C-169 574566 Plants Plants 51.2 1.25e-5   NR XP_005645335.1 574566 g37950 i0 50.8 1.30487804878049 59 20 72 2 15 191 29 78 XP_005645335.1 nucleic acid-binding protein [Coccomyxa subellipsoidea C-169] diamond 321 51.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
28063588 28063588 PRJNA757618_P_NODE_28045_length_252_cov_0.871508_g26993_i0 PRJNA757618 28045 252 0.871508 2.19620016 Trebouxia sp. C 2796353 Plants Plants 137 1.76e-35   NR KAL3147179.1 3373145 g26993 i0 87.7 0.964285714285714 81 9 96.4 1 245 3 76 155 KAL3147179.1 hypothetical protein ABBQ32_002684 [Trebouxia sp. C0010 RCD-2024] diamond 243 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0010 RCD-2024
31190001 31190001 PRJNA757618_P_NODE_28035_length_252_cov_0.871508_g26983_i0 PRJNA757618 28035 252 0.871508 2.19620016 Haematococcus lacustris 44745 Plants Plants 48.5 3.93e-4   NR KAJ9506076.1 44745 g26983 i0 41.5 2.91666666666667 65 35 73.8 1 210 25 501 565 KAJ9506076.1 hypothetical protein QJQ45_016585 [Haematococcus lacustris] diamond 735 48.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;