RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA756891" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA756891 · 12 ✖

analysis 1

  • diamond · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5030524 5030524 PRJNA756891_P_NODE_13004_length_249_cov_0.875000_g12935_i0 PRJNA756891 13004 249 0.875 2.17875 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 97.1 2.45e-21   NR CEP01042.1 37360 g12935 i0 57.8 2.28915662650602 90 30 98.8 2 247 2 182 271 CEP01042.1 hypothetical protein PBRA_008354 [Plasmodiophora brassicae] diamond 570 97.1 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
17779997 17779997 PRJNA756891_P_NODE_1714_length_628_cov_13.090090_g1647_i0 PRJNA756891 1714 628 13.09009 82.2057652 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 163 1.7099999999999998e-47   NR SPQ93437.1 37360 g1647 i0 68.1 2.19745222929936 119 36 56.8 1 12 368 32 148 SPQ93437.1 unnamed protein product [Plasmodiophora brassicae] diamond 1380 163 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27473609 27473609 PRJNA756891_P_NODE_6143_length_344_cov_1.568266_g6074_i0 PRJNA756891 6143 344 1.568266 5.39483504 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 171 1.11e-51   NR CEO94730.1 37360 g6074 i0 66.7 11.9302325581395 114 38 99.4 0 3 344 6 119 CEO94730.1 hypothetical protein PBRA_000516 [Plasmodiophora brassicae] diamond 4104 171 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27536773 27536773 PRJNA756891_P_NODE_5663_length_357_cov_1.056338_g5594_i0 PRJNA756891 5663 357 1.056338 3.77112666 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 158 3.62e-42   NR AVG22652.1 37360 g5594 i0 58.8 6.94957983193277 119 48 99.2 1 357 4 132 250 AVG22652.1 MAPKKK5 [Plasmodiophora brassicae] diamond 2481 158 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28095198 28095198 PRJNA756891_P_NODE_1725_length_627_cov_2.698556_g1658_i0 PRJNA756891 1725 627 2.698556 16.91994612 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 186 1.19e-53   NR CEO99213.1 37360 g1658 i0 51.9 2.96172248803828 206 95 98.1 3 2 616 129 331 CEO99213.1 hypothetical protein PBRA_001119 [Plasmodiophora brassicae] diamond 1857 186 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28547331 28547331 PRJNA756891_P_NODE_16247_length_241_cov_3.434524_g16178_i0 PRJNA756891 16247 241 3.434524 8.27720284 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 98.2 1.13e-21   NR CEO97381.1 37360 g16178 i0 63.3 7.87966804979253 79 29 98.3 0 2 238 848 926 CEO97381.1 hypothetical protein PBRA_000726 [Plasmodiophora brassicae] diamond 1899 98.6 0.995943204868154 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29137422 29137422 PRJNA756891_P_NODE_14529_length_245_cov_1.604651_g14460_i0 PRJNA756891 14529 245 1.604651 3.93139495 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 66.6 1.78e-11   NR CEP02293.1 37360 g14460 i0 57.4 0.661224489795918 54 23 66.1 0 241 80 50 103 CEP02293.1 hypothetical protein PBRA_008877 [Plasmodiophora brassicae] diamond 162 66.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29326510 29326510 PRJNA756891_P_NODE_8469_length_299_cov_1.022124_g8400_i0 PRJNA756891 8469 299 1.022124 3.05615076 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 57.8 3.67e-7   NR CEP03756.1 37360 g8400 i0 52.2 0.953177257525084 46 22 46.2 0 3 140 414 459 CEP03756.1 hypothetical protein PBRA_003363 [Plasmodiophora brassicae] diamond 285 57.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30369346 30369346 PRJNA756891_P_NODE_3672_length_438_cov_2.208219_g3603_i0 PRJNA756891 3672 438 2.208219 9.67199922 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 64.7 2.45e-9   NR CEO97710.1 37360 g3603 i0 34 2.66438356164384 94 62 64.4 0 379 98 21 114 CEO97710.1 hypothetical protein PBRA_005824 [Plasmodiophora brassicae] diamond 1167 64.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30400959 30400959 PRJNA756891_P_NODE_1413_length_683_cov_4.134426_g1349_i0 PRJNA756891 1413 683 4.134426 28.23812958 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 138 2.25e-36   NR CEO99991.1 37360 g1349 i0 42.8 2.10834553440703 166 86 72.9 1 599 102 38 194 CEO99991.1 hypothetical protein PBRA_007725 [Plasmodiophora brassicae] diamond 1440 138 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30526789 30526789 PRJNA756891_P_NODE_12353_length_251_cov_0.865169_g12284_i0 PRJNA756891 12353 251 0.865169 2.17157419 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 62 6.54e-9   NR CEO95993.1 37360 g12284 i0 33.8 1.76892430278884 74 48 87.3 1 242 24 389 462 CEO95993.1 hypothetical protein PBRA_004683 [Plasmodiophora brassicae] diamond 444 62 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30726205 30726205 PRJNA756891_P_NODE_5994_length_348_cov_1.400000_g5925_i0 PRJNA756891 5994 348 1.4 4.872 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 110 2.18e-25   NR CEP03242.1 37360 g5925 i0 50 2.81034482758621 108 54 93.1 0 2 325 544 651 CEP03242.1 hypothetical protein PBRA_003002 [Plasmodiophora brassicae] diamond 978 110 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;