RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA756891" and tax_phylum = "Candidatus Bipolaricaulota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Bipolaricaulota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA756891 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27495386 27495386 PRJNA756891_P_NODE_13883_length_247_cov_0.885057_g13814_i0 PRJNA756891 13883 247 0.885057 2.18609079 Candidatus Acetothermia bacterium 2053493 Bacteria Bacteria 58.9 7.69e-8   NR RLE30429.1 2053493 g13814 i0 41.8 0.959514170040486 79 44 94.7 2 13 246 153 230 RLE30429.1 MAG: recombinase family protein, partial [Candidatus Acetothermia bacterium] diamond 237 58.9 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota         Candidatus Acetothermia bacterium
28663634 28663634 PRJNA756891_P_NODE_13607_length_247_cov_1.954023_g13538_i0 PRJNA756891 13607 247 1.954023 4.82643681 Candidatus Bipolaricaulota bacterium 2306012 Bacteria Bacteria 48.1 4.09e-4   NR MCS6936493.1 2306012 g13538 i0 75.9 0.352226720647773 29 7 35.2 0 161 247 2 30 MCS6936493.1 YebC/PmpR family DNA-binding transcriptional regulator [Candidatus Bipolaricaulota bacterium] diamond 87 48.1 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota         Candidatus Bipolaricaulota bacterium
32234560 32234560 PRJNA756891_P_NODE_15898_length_242_cov_0.911243_g15829_i0 PRJNA756891 15898 242 0.911243 2.20520806 Candidatus Bipolaricaulia bacterium 3121610 Bacteria Bacteria 76.3 4.34e-14   NR MFN4218778.1 3121610 g15829 i0 48.6 0.91735537190082606 74 35 91.7 2 224 3 208 278 MFN4218778.1 pectin acetylesterase-family hydrolase [Candidatus Bipolaricaulia bacterium] diamond 222 76.3 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota Candidatus Bipolaricaulia       Candidatus Bipolaricaulia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;