RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA753704" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA753704 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24957563 24957563 PRJNA753704_P_NODE_18680_length_280_cov_1.971014_g18319_i0 PRJNA753704 18680 280 1.971014 5.5188392 Treponema sp. 166 Bacteria Bacteria 70.5 9.73e-12   NR MDR2942850.1 166 g18319 i0 47.6 0.9 84 43 88.9 1 263 15 267 350 MDR2942850.1 response regulator [Treponema sp.] diamond 252 70.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
27021292 27021292 PRJNA753704_P_NODE_27522_length_244_cov_0.912281_g27161_i0 PRJNA753704 27522 244 0.912281 2.22596564 Leptospira wolffii 409998 Bacteria Bacteria 60.8 1.5e-8   NR WP_210414470.1 409998 g27161 i0 52.9 0.627049180327869 51 24 62.7 0 155 3 83 133 WP_210414470.1 alpha/beta fold hydrolase [Leptospira wolffii] diamond 153 60.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira wolffii
31601681 31601681 PRJNA753704_P_NODE_27816_length_243_cov_0.917647_g27455_i0 PRJNA753704 27816 243 0.917647 2.22988221 Spirochaetales bacterium 2026792 Bacteria Bacteria 44.3 0.0106   NR MBN2736923.1 2026792 g27455 i0 32.8 0.827160493827161 67 41 80.2 2 34 228 322 386 MBN2736923.1 HD domain-containing protein [Spirochaetales bacterium] diamond 201 44.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium
31927649 31927649 PRJNA753704_P_NODE_25137_length_249_cov_0.886364_g24776_i0 PRJNA753704 25137 249 0.886364 2.20704636 Treponema 157 Bacteria Bacteria 58.5 1.06e-7   NR NLJ46724.1 166 g24776 i0 60 4.33734939759036 45 18 54.2 0 115 249 1 45 NLJ46724.1 DegT/DnrJ/EryC1/StrS family aminotransferase [Treponema sp.] diamond 1080 58.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
32361056 32361056 PRJNA753704_P_NODE_27059_length_245_cov_0.906977_g26698_i0 PRJNA753704 27059 245 0.906977 2.22209365 Sphaerochaetaceae bacterium 2791017 Bacteria Bacteria 108 2.61e-25   NR MFA7019182.1 2791017 g26698 i0 90 0.73469387755102 60 6 73.5 0 3 182 666 725 MFA7019182.1 DnaB-like helicase C-terminal domain-containing protein [Sphaerochaetaceae bacterium] diamond 180 108 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae   Sphaerochaetaceae bacterium
32487544 32487544 PRJNA753704_P_NODE_23539_length_253_cov_0.866667_g23178_i0 PRJNA753704 23539 253 0.866667 2.19266751 Rectinemataceae bacterium 3064674 Bacteria Bacteria 45.1 0.00598   NR MDP2816068.1 3064674 g23178 i0 47.9 0.569169960474308 48 24 55.7 1 151 11 47 94 MDP2816068.1 hypothetical protein [Rectinemataceae bacterium] diamond 144 45.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Rectinemataceae   Rectinemataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;