RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA753704" and tax_phylum = "Porifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA753704 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8384480 8384480 PRJNA753704_P_NODE_5667_length_480_cov_2.574939_g5306_i0 PRJNA753704 5667 480 2.574939 12.3597072 Geodia barretti 519541 Porifera other_Eukaryota 120 6.19e-31   NR CAI8030757.1 519541 g5306 i0 51.8 0.86875 139 52 82.5 6 398 3 18 148 CAI8030757.1 hypothetical protein GBAR_LOCUS17449 [Geodia barretti] diamond 417 120 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Tetractinellida Geodiidae Geodia Geodia barretti
10130747 10130747 PRJNA753704_P_NODE_28448_length_242_cov_0.923077_g28087_i0 PRJNA753704 28448 242 0.923077 2.23384634 Opisthokonta 33154 Porifera other_Eukaryota 110 5.35e-26   NR XP_065829077.1 121494 g28087 i0 65 5.9504132231405 80 25 99.2 1 2 241 215 291 XP_065829077.1 endoplasmin-like [Oscarella lobularis] diamond 1440 110 1 Eukaryota Opisthokonta Metazoa Porifera Homoscleromorpha Homosclerophorida Oscarellidae Oscarella Oscarella lobularis
31316835 31316835 PRJNA753704_P_NODE_12115_length_341_cov_1.552239_g11754_i0 PRJNA753704 12115 341 1.552239 5.29313499 Geodia barretti 519541 Porifera other_Eukaryota 75.9 2.14e-14   NR CAI8030757.1 519541 g11754 i0 51.2 0.721407624633431 82 31 67.7 3 233 3 78 155 CAI8030757.1 hypothetical protein GBAR_LOCUS17449 [Geodia barretti] diamond 246 75.9 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Tetractinellida Geodiidae Geodia Geodia barretti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;