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contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA753704" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 19 ✖

tax_clade 1

bioproject 1

  • PRJNA753704 · 19 ✖

analysis 1

  • diamond · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5834644 5834644 PRJNA753704_P_NODE_21785_length_261_cov_5.723404_g21424_i0 PRJNA753704 21785 261 5.723404 14.93808444 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 98.6 2.0099999999999994e-23   NR XP_024584861.1 4781 g21424 i0 97.7 6.50574712643678 44 1 50.6 0 261 130 137 180 XP_024584861.1 adp-ribosylation factor [Plasmopara halstedii] diamond 1698 99 0.995959595959596 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
17309336 17309336 PRJNA753704_P_NODE_7914_length_414_cov_1.607038_g7553_i0 PRJNA753704 7914 414 1.607038 6.65313732 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 113 5.72e-26   NR KAF0685444.1 120398 g7553 i0 68 0.884057971014493 122 39 88.4 0 45 410 297 418 KAF0685444.1 hypothetical protein As57867_022588 [Aphanomyces stellatus] diamond 366 113 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
27147284 27147284 PRJNA753704_P_NODE_25662_length_248_cov_0.891429_g25301_i0 PRJNA753704 25662 248 0.891429 2.21074392 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 45.1 0.00589   NR KAG1692085.1 4784 g25301 i0 47.1 2.46774193548387 51 21 61.7 2 242 90 57 101 KAG1692085.1 hypothetical protein DVH05_025893 [Phytophthora capsici] diamond 612 45.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
27748118 27748118 PRJNA753704_P_NODE_27384_length_244_cov_0.912281_g27023_i0 PRJNA753704 27384 244 0.912281 2.22596564 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 64.7 6.57e-10   NR KAF0708737.1 112090 g27023 i0 42.9 0.94672131147541 77 39 89.8 3 236 18 143 218 KAF0708737.1 hypothetical protein AaE_013105 [Aphanomyces astaci] diamond 231 64.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
28032140 28032140 PRJNA753704_P_NODE_12605_length_335_cov_0.996183_g12244_i0 PRJNA753704 12605 335 0.996183 3.33721305 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 54.3 9.44e-6   NR TMW58223.1 41045 g12244 i0 33.3 0.752238805970149 84 56 75.2 0 57 308 531 614 TMW58223.1 hypothetical protein Poli38472_011811 [Pythium oligandrum] diamond 252 54.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
28032141 28032141 PRJNA753704_P_NODE_13105_length_329_cov_1.085938_g12744_i0 PRJNA753704 13105 329 1.085938 3.57273602 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 133 4.45e-34   NR DBA04764.1 4803 g12744 i0 63.1 5.65349544072948 103 38 93.9 0 19 327 50 152 DBA04764.1 TPA: hypothetical protein N0F65_004401 [Lagenidium giganteum] diamond 1860 133 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
29105741 29105741 PRJNA753704_P_NODE_28028_length_243_cov_0.917647_g27667_i0 PRJNA753704 28028 243 0.917647 2.22988221 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 53.1 7.82e-6   NR OQS03262.1 74557 g27667 i0 32.5 0.987654320987654 80 53 98.8 1 241 2 74 152 OQS03262.1 ATP-binding Cassette (ABC) Superfamily, partial [Thraustotheca clavata] diamond 240 53.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
29421116 29421116 PRJNA753704_P_NODE_25429_length_248_cov_2.674286_g25068_i0 PRJNA753704 25429 248 2.674286 6.63222928 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 103 1.1699999999999997e-23   NR DBA01320.1 4803 g25068 i0 61 1.86290322580645 77 29 91.9 1 230 3 149 225 DBA01320.1 TPA: hypothetical protein N0F65_001825, partial [Lagenidium giganteum] diamond 462 103 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
29588688 29588688 PRJNA753704_P_NODE_27030_length_245_cov_0.906977_g26669_i0 PRJNA753704 27030 245 0.906977 2.22209365 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 80.9 1.42e-15   NR TMW57632.1 41045 g26669 i0 59.7 7.62857142857143 67 27 82 0 231 31 394 460 TMW57632.1 hypothetical protein Poli38472_003557 [Pythium oligandrum] diamond 1869 80.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
29683411 29683411 PRJNA753704_P_NODE_17830_length_286_cov_1.464789_g17469_i0 PRJNA753704 17830 286 1.464789 4.18929654 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0223   NR XP_009839372.1 112090 g17469 i0 32.9 1.6993006993007 79 53 82.9 0 284 48 208 286 XP_009839372.1 hypothetical protein H257_13524, partial [Aphanomyces astaci] diamond 486 43.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
30716291 30716291 PRJNA753704_P_NODE_11514_length_349_cov_1.550725_g11153_i0 PRJNA753704 11514 349 1.550725 5.41203025 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 99.4 1.72e-22   NR XP_008619925.1 1156394 g11153 i0 42.2 0.997134670487106 116 61 98.9 3 349 5 9 119 XP_008619925.1 hypothetical protein SDRG_15527 [Saprolegnia diclina VS20] diamond 348 99.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
30916010 30916010 PRJNA753704_P_NODE_15954_length_301_cov_1.315789_g15593_i0 PRJNA753704 15954 301 1.315789 3.96052489 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 90.1 1.79e-18   NR GLE03447.1 114742 g15593 i0 51 2.00332225913621 102 46 97.7 3 301 8 320 421 GLE03447.1 hypothetical protein PINS_up012349 [Pythium insidiosum] diamond 603 90.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
31136695 31136695 PRJNA753704_P_NODE_20515_length_269_cov_1.183673_g20154_i0 PRJNA753704 20515 269 1.183673 3.18408037 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 111 6.07e-28   NR DAZ97987.1 4803 g20154 i0 59.6 14.8884758364312 89 36 99.3 0 267 1 23 111 DAZ97987.1 TPA: hypothetical protein N0F65_005145 [Lagenidium giganteum] diamond 4005 111 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
31316836 31316836 PRJNA753704_P_NODE_12515_length_336_cov_1.315589_g12154_i0 PRJNA753704 12515 336 1.315589 4.42037904 Phytophthora kernoviae 325452 SAR_Eukaryotes SAR_Eukaryotes 66.2 6.57e-10   NR KAG2506600.1 325452 g12154 i0 48 1.9375 75 36 66.1 2 225 4 158 230 KAG2506600.1 hypothetical protein JM16_008512 [Phytophthora kernoviae] diamond 651 66.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora kernoviae
31411786 31411786 PRJNA753704_P_NODE_25216_length_249_cov_0.886364_g24855_i0 PRJNA753704 25216 249 0.886364 2.20704636 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 77.4 6.64e-15   NR TYZ53195.1 1485010 g24855 i0 51.9 2.93975903614458 81 39 97.6 0 5 247 112 192 TYZ53195.1 hypothetical protein PybrP1_011763 [[Pythium] brassicae (nom. inval.)] diamond 732 77.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
31516685 31516685 PRJNA753704_P_NODE_16756_length_294_cov_1.705882_g16395_i0 PRJNA753704 16756 294 1.705882 5.01529308 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 110 2.21e-27   NR KAH9182709.1 100861 g16395 i0 52.1 3.91836734693878 96 44 98 1 292 5 129 222 KAH9182709.1 hypothetical protein AeNC1_015312, partial [Aphanomyces euteiches] diamond 1152 111 0.990990990990991 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
31601670 31601670 PRJNA753704_P_NODE_16856_length_293_cov_2.086364_g16495_i0 PRJNA753704 16856 293 2.086364 6.11304652 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 132 1.51e-33   NR KAH9124623.1 100861 g16495 i0 75 1.95563139931741 96 24 98.3 0 2 289 444 539 KAH9124623.1 hypothetical protein AeMF1_004641 [Aphanomyces euteiches] diamond 573 132 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
32117642 32117642 PRJNA753704_P_NODE_17918_length_285_cov_2.518868_g17557_i0 PRJNA753704 17918 285 2.518868 7.1787738 root 1 Root_unresolved Root_unresolved 50.8 9.18e-5   NR KAL4132926.1 164328 g17557 i0 40.2 3.46315789473684 97 52 95.8 1 12 284 842 938 KAL4132926.1 hypothetical protein PRIC2_003255 [Phytophthora ramorum] diamond 987 51.2 0.9921875 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
32718006 32718006 PRJNA753704_P_NODE_20180_length_271_cov_1.181818_g19819_i0 PRJNA753704 20180 271 1.181818 3.20272678 root 1 Root_unresolved Root_unresolved 103 4.46e-25   NR GLD98138.1 114742 g19819 i0 59.7 3.44280442804428 77 31 85.2 0 270 40 36 112 GLD98138.1 hypothetical protein PINS_up006835 [Pythium insidiosum] diamond 933 104 0.990384615384615 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;