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contig_metadata

23 rows where analysis = "diamond", bioproject = "PRJNA753704" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 23 ✖

tax_kingdom 1

bioproject 1

  • PRJNA753704 · 23 ✖

analysis 1

  • diamond · 23 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16033618 16033618 PRJNA753704_P_NODE_17233_length_290_cov_1.870968_g16872_i0 PRJNA753704 17233 290 1.870968 5.4258072 Myxococcaceae bacterium 2484252 Bacteria Bacteria 179 5.71e-53   NR RYZ13579.1 2484252 g16872 i0 92.7 0.993103448275862 96 7 99.3 0 1 288 186 281 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 288 179 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
24957619 24957619 PRJNA753704_P_NODE_24060_length_252_cov_0.871508_g23699_i0 PRJNA753704 24060 252 0.871508 2.19620016 Myxococcales bacterium 2026763 Bacteria Bacteria 110 4.3e-28   NR MBK8216004.1 2026763 g23699 i0 75.3 1.92857142857143 81 18 94 1 237 1 4 84 MBK8216004.1 hypothetical protein [Myxococcales bacterium] diamond 486 110 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27094329 27094329 PRJNA753704_P_NODE_27902_length_243_cov_0.917647_g27541_i0 PRJNA753704 27902 243 0.917647 2.22988221 PVC group 1783257 Bacteria Bacteria 43.1 0.0276   NR MBI3295692.1 2026735 g27541 i0 46 2.28395061728395 63 32 75.3 2 58 240 79 141 MBI3295692.1 LamG domain-containing protein [Deltaproteobacteria bacterium] diamond 555 43.5 0.990804597701149 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27147278 27147278 PRJNA753704_P_NODE_17102_length_291_cov_1.954128_g16741_i0 PRJNA753704 17102 291 1.954128 5.68651248 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 124 7.52e-33   NR MBP6743406.1 2026735 g16741 i0 67 1 97 32 100 0 1 291 85 181 MBP6743406.1 Crp/Fnr family transcriptional regulator [Deltaproteobacteria bacterium] diamond 291 124 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27526840 27526840 PRJNA753704_P_NODE_24883_length_250_cov_0.881356_g24522_i0 PRJNA753704 24883 250 0.881356 2.20339 Myxococcales bacterium 2026763 Bacteria Bacteria 140 3.31e-38   NR MBK6463553.1 2026763 g24522 i0 89.2 0.996 83 9 99.6 0 250 2 226 308 MBK6463553.1 hypothetical protein [Myxococcales bacterium] diamond 249 140 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27716681 27716681 PRJNA753704_P_NODE_16184_length_299_cov_1.380531_g15823_i0 PRJNA753704 16184 299 1.380531 4.12778769 Polyangia bacterium 3058050 Bacteria Bacteria 46.6 0.00196   NR HJZ87591.1 3058050 g15823 i0 36 3.561872909699 89 50 89.3 2 1 267 56 137 HJZ87591.1 class I SAM-dependent methyltransferase [Polyangia bacterium] diamond 1065 46.6 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
27811235 27811235 PRJNA753704_P_NODE_8644_length_397_cov_5.240741_g8283_i0 PRJNA753704 8644 397 5.240741 20.80574177 Polyangiaceae bacterium 2268199 Bacteria Bacteria 108 1.13e-24   NR MBK8256631.1 2268199 g8283 i0 47.9 1.82871536523929 121 44 89.9 2 39 395 190 293 MBK8256631.1 hypothetical protein [Polyangiaceae bacterium] diamond 726 108 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28379326 28379326 PRJNA753704_P_NODE_21466_length_263_cov_2.410526_g21105_i0 PRJNA753704 21466 263 2.410526 6.33968338 Myxococcales bacterium 2026763 Bacteria Bacteria 97.4 1.87e-21   NR MCA9614681.1 2026763 g21105 i0 80.6 0.76425855513308 67 13 76.4 0 202 2 3 69 MCA9614681.1 group II intron reverse transcriptase/maturase [Myxococcales bacterium] diamond 201 97.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28568737 28568737 PRJNA753704_P_NODE_14387_length_315_cov_1.933884_g14026_i0 PRJNA753704 14387 315 1.933884 6.0917346 Polyangiaceae bacterium 2268199 Bacteria Bacteria 43.5 0.0472   NR MEB2310636.1 2268199 g14026 i0 30.6 0.685714285714286 72 45 65.7 3 292 86 1200 1269 MEB2310636.1 MopE-related protein [Polyangiaceae bacterium] diamond 216 43.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28663618 28663618 PRJNA753704_P_NODE_26487_length_246_cov_0.901734_g26126_i0 PRJNA753704 26487 246 0.901734 2.21826564 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 50.1 9.63e-5   NR MBI2375101.1 2026735 g26126 i0 70 0.365853658536585 30 9 36.6 0 242 153 364 393 MBI2375101.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 90 50.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29200466 29200466 PRJNA753704_P_NODE_15829_length_302_cov_1.213974_g15468_i0 PRJNA753704 15829 302 1.213974 3.66620148 Polyangiaceae bacterium 2268199 Bacteria Bacteria 115 2.59e-29   NR NOU29347.1 2268199 g15468 i0 87.9 0.655629139072848 66 8 65.6 0 198 1 1 66 NOU29347.1 50S ribosomal protein L1 [Polyangiaceae bacterium] diamond 198 115 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
29841660 29841660 PRJNA753704_P_NODE_27371_length_244_cov_0.912281_g27010_i0 PRJNA753704 27371 244 0.912281 2.22596564 Pseudomonadati 3379134 Bacteria Bacteria 110 3.96e-26   NR WP_104977573.1 56 g27010 i0 69.1 12.9467213114754 81 25 99.6 0 2 244 116 196 WP_104977573.1 PLP-dependent aminotransferase family protein [Sorangium cellulosum] diamond 3159 111 0.990990990990991 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
29936491 29936491 PRJNA753704_P_NODE_25671_length_248_cov_0.891429_g25310_i0 PRJNA753704 25671 248 0.891429 2.21074392 Myxococcia 32015 Bacteria Bacteria 71.2 2.87e-12   NR MCA9695264.1 2026763 g25310 i0 44.9 2.41935483870968 69 38 83.5 0 208 2 255 323 MCA9695264.1 hypothetical protein [Myxococcales bacterium] diamond 600 71.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30062616 30062616 PRJNA753704_P_NODE_23591_length_253_cov_0.866667_g23230_i0 PRJNA753704 23591 253 0.866667 2.19266751 Pseudomonadati 3379134 Bacteria Bacteria 76.3 6.83e-14   NR MCB9729663.1 2026735 g23230 i0 49.4 4.54150197628458 77 34 91.3 2 249 19 279 350 MCB9729663.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 1149 77 0.990909090909091 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30115986 30115986 PRJNA753704_P_NODE_25812_length_248_cov_0.891429_g25451_i0 PRJNA753704 25812 248 0.891429 2.21074392 Myxococcales bacterium 2026763 Bacteria Bacteria 92 1.3e-19   NR MBL8613345.1 2026763 g25451 i0 56.3 0.967741935483871 80 35 96.8 0 245 6 88 167 MBL8613345.1 hypothetical protein [Myxococcales bacterium] diamond 240 92 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30274346 30274346 PRJNA753704_P_NODE_26472_length_246_cov_0.901734_g26111_i0 PRJNA753704 26472 246 0.901734 2.21826564 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 108 3.64e-25   NR MBI5512447.1 2026735 g26111 i0 63.6 0.939024390243902 77 27 93.9 1 7 237 331 406 MBI5512447.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 231 108 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31453360 31453360 PRJNA753704_P_NODE_19636_length_274_cov_1.552239_g19275_i0 PRJNA753704 19636 274 1.552239 4.25313486 Bacteria 2 Bacteria Bacteria 132 1.01e-34   NR MBL9003528.1 2026763 g19275 i0 65.9 3.97445255474453 91 28 96.4 1 266 3 167 257 MBL9003528.1 DUF1588 domain-containing protein [Myxococcales bacterium] diamond 1089 132 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31453364 31453364 PRJNA753704_P_NODE_5696_length_479_cov_1.068966_g5335_i0 PRJNA753704 5696 479 1.068966 5.12034714 Pseudomonadati 3379134 Bacteria Bacteria 61.2 1.73e-7   NR PZR12840.1 48 g5335 i0 41 6.36951983298539 139 70 84.6 6 3 407 1031 1161 PZR12840.1 MAG: hypothetical protein DI536_14880 [Archangium gephyra] diamond 3051 61.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
31516684 31516684 PRJNA753704_P_NODE_16436_length_297_cov_1.071429_g16075_i0 PRJNA753704 16436 297 1.071429 3.18214413 Haliangium 162027 Bacteria Bacteria 147 5.61e-41   NR WP_088740697.1 1931276 g16075 i0 74.5 3.95959595959596 98 25 99 0 3 296 203 300 WP_088740697.1 phage tail protein [Haliangium sp. UPWRP_2] diamond 1176 147 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium sp. UPWRP_2
32234540 32234540 PRJNA753704_P_NODE_25598_length_248_cov_0.891429_g25237_i0 PRJNA753704 25598 248 0.891429 2.21074392 Myxococcales bacterium 2026763 Bacteria Bacteria 101 2.21e-25   NR MBL9107009.1 2026763 g25237 i0 65.9 0.991935483870968 82 27 99.2 1 246 1 19 99 MBL9107009.1 biopolymer transporter ExbD [Myxococcales bacterium] diamond 246 101 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32582369 32582369 PRJNA753704_P_NODE_19199_length_277_cov_1.294118_g18838_i0 PRJNA753704 19199 277 1.294118 3.58470686 Pyxidicoccus caerfyrddinensis 2709663 Bacteria Bacteria 48.5 4.4e-4   NR WP_205519457.1 2709663 g18838 i0 33 1.01805054151625 94 48 92.1 3 257 3 51 138 WP_205519457.1 Hint domain-containing protein [Pyxidicoccus caerfyrddinensis] diamond 282 48.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pyxidicoccus Pyxidicoccus caerfyrddinensis
32582370 32582370 PRJNA753704_P_NODE_20779_length_267_cov_1.608247_g20418_i0 PRJNA753704 20779 267 1.608247 4.29401949 Myxococcaceae bacterium 2484252 Bacteria Bacteria 92.8 1.3e-19   NR RYZ17952.1 2484252 g20418 i0 51.1 0.98876404494382 88 43 98.9 0 267 4 1233 1320 RYZ17952.1 MAG: DUF3385 domain-containing protein, partial [Myxococcaceae bacterium] diamond 264 92.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
32865545 32865545 PRJNA753704_P_NODE_16640_length_295_cov_1.612613_g16279_i0 PRJNA753704 16640 295 1.612613 4.75720835 Polyangiaceae bacterium 2268199 Bacteria Bacteria 106 1.1e-25   NR MEZ4315725.1 2268199 g16279 i0 54 0.884745762711864 87 40 88.5 0 262 2 30 116 MEZ4315725.1 hypothetical protein [Polyangiaceae bacterium] diamond 261 106 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;