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contig_metadata

15 rows where analysis = "diamond", bioproject = "PRJNA753704" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA753704 · 15 ✖

analysis 1

  • diamond · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8384263 8384263 PRJNA753704_P_NODE_14827_length_311_cov_1.310924_g14466_i0 PRJNA753704 14827 311 1.310924 4.07697364 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 174 7.24e-53   NR XP_039249937.1 7725 g14466 i0 89.1 135.35691318328 92 10 88.7 0 35 310 1 92 XP_039249937.1 ras-related protein Rab-7a-like [Styela clava] diamond 42096 175 0.994285714285714 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
19858010 19858010 PRJNA753704_P_NODE_16036_length_300_cov_1.859031_g15675_i0 PRJNA753704 16036 300 1.859031 5.577093 Opisthokonta 33154 Chordata Chordata 121 7.5e-33   NR XP_009859881.1 7719 g15675 i0 71.4 20.24 91 23 88 2 32 295 1 91 XP_009859881.1 late histone H2A.2.2 [Ciona intestinalis] diamond 6072 121 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
27821053 27821053 PRJNA753704_P_NODE_27444_length_244_cov_0.912281_g27083_i0 PRJNA753704 27444 244 0.912281 2.22596564 Metazoa 33208 Chordata Chordata 57.4 7.06e-8   NR XP_045010327.1 51337 g27083 i0 38 2.63114754098361 71 40 82.4 1 36 236 17 87 XP_045010327.1 ADP-sugar pyrophosphatase-like [Jaculus jaculus] diamond 642 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Dipodidae Jaculus Jaculus jaculus
28347765 28347765 PRJNA753704_P_NODE_16186_length_299_cov_1.380531_g15825_i0 PRJNA753704 16186 299 1.380531 4.12778769 Branchiostoma floridae 7739 Chordata Chordata 55.8 1.84e-6   NR XP_035688303.1 7739 g15825 i0 42.2 1.79598662207358 64 32 61.2 2 55 237 141 202 XP_035688303.1 fibrillin-2-like isoform X3 [Branchiostoma floridae] diamond 537 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
29105737 29105737 PRJNA753704_P_NODE_23448_length_253_cov_0.866667_g23087_i0 PRJNA753704 23448 253 0.866667 2.19266751 Branchiostoma lanceolatum 7740 Chordata Chordata 86.7 1.4e-17   NR CAH1239779.1 7740 g23087 i0 48.2 2.01581027667984 85 42 98.4 1 5 253 384 468 CAH1239779.1 PM20D1 [Branchiostoma lanceolatum] diamond 510 86.7 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
29200481 29200481 PRJNA753704_P_NODE_8169_length_408_cov_1.283582_g7808_i0 PRJNA753704 8169 408 1.283582 5.23701456 Branchiostoma belcheri 7741 Chordata Chordata 44.7 0.0487   NR XP_019623126.1 7741 g7808 i0 31.3 0.963235294117647 131 78 96.3 3 394 2 1983 2101 XP_019623126.1 PREDICTED: fibrocystin-L-like [Branchiostoma belcheri] diamond 393 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29368082 29368082 PRJNA753704_P_NODE_16329_length_298_cov_1.040000_g15968_i0 PRJNA753704 16329 298 1.04 3.0992 root 1 Root_unresolved Root_unresolved 107 2.22e-25   NR ACS69064.1 7765 g15968 i0 61.2 33.8859060402685 85 27 85.6 2 43 297 3 81 ACS69064.1 glyceraldehyde-3-phosphate dehydrogenase [Eptatretus stoutii] diamond 10098 107 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Eptatretus Eptatretus stoutii
30694633 30694633 PRJNA753704_P_NODE_26793_length_245_cov_1.808140_g26432_i0 PRJNA753704 26793 245 1.80814 4.429943 Chordata 7711 Chordata Chordata 62 6.09e-9   NR XP_038668701.1 7830 g26432 i0 43.2 22.0775510204082 81 34 88.2 3 28 243 60 137 XP_038668701.1 serine/threonine-protein kinase Chk2 [Scyliorhinus canicula] diamond 5409 62 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
30726195 30726195 PRJNA753704_P_NODE_19974_length_272_cov_1.427136_g19613_i0 PRJNA753704 19974 272 1.427136 3.88180992 Metazoa 33208 Chordata Chordata 92.4 1.76e-19   NR XP_067905327.1 7792 g19613 i0 50.6 19.3455882352941 87 42 96 1 270 10 198 283 XP_067905327.1 conserved oligomeric Golgi complex subunit 8 [Heterodontus francisci] diamond 5262 93.2 0.991416309012876 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Heterodontiformes Heterodontidae Heterodontus Heterodontus francisci
31095500 31095500 PRJNA753704_P_NODE_9935_length_373_cov_3.903333_g9574_i0 PRJNA753704 9935 373 3.903333 14.55943209 Staurois parvus 386267 Chordata Chordata 59.7 3.45e-9   NR CAI9620946.1 386267 g9574 i0 70.3 0.297587131367292 37 11 29.8 0 80 190 23 59 CAI9620946.1 unnamed protein product [Staurois parvus] diamond 111 59.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
31253554 31253554 PRJNA753704_P_NODE_17975_length_285_cov_1.297170_g17614_i0 PRJNA753704 17975 285 1.29717 3.6969345 Rhinolophus sinicus 89399 Chordata Chordata 51.2 6.48e-5   NR XP_019605254.1 89399 g17614 i0 42.6 0.568421052631579 54 30 55.8 1 97 255 545 598 XP_019605254.1 PREDICTED: matrilin-4 isoform X1 [Rhinolophus sinicus] diamond 162 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Rhinolophidae Rhinolophus Rhinolophus sinicus
31601682 31601682 PRJNA753704_P_NODE_28316_length_242_cov_0.923077_g27955_i0 PRJNA753704 28316 242 0.923077 2.23384634 Xenopus laevis 8355 Chordata Chordata 63.5 1.07e-9   NR OCU00332.1 8355 g27955 i0 51.8 2.03305785123967 56 27 69.4 0 5 172 71 126 OCU00332.1 hypothetical protein XELAEV_18006103mg [Xenopus laevis] diamond 492 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
32149265 32149265 PRJNA753704_P_NODE_21358_length_264_cov_1.340314_g20997_i0 PRJNA753704 21358 264 1.340314 3.53842896 Metazoa 33208 Chordata Chordata 43.9 0.0182   NR XP_035667135.1 7739 g20997 i0 33.9 5.56818181818182 59 38 65.9 1 262 89 441 499 XP_035667135.1 ras-specific guanine nucleotide-releasing factor 1-like isoform X2 [Branchiostoma floridae] diamond 1470 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32266153 32266153 PRJNA753704_P_NODE_27798_length_243_cov_1.035294_g27437_i0 PRJNA753704 27798 243 1.035294 2.51576442 Phodopus roborovskii 109678 Chordata Chordata 45.4 0.0035   NR XP_051042541.1 109678 g27437 i0 37.3 0.827160493827161 67 33 80.2 2 228 34 22 81 XP_051042541.1 LOW QUALITY PROTEIN: glutathione S-transferase theta-2-like [Phodopus roborovskii] diamond 201 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Phodopus Phodopus roborovskii
32519260 32519260 PRJNA753704_P_NODE_11359_length_351_cov_2.737410_g10998_i0 PRJNA753704 11359 351 2.73741 9.6083091 Erpetoichthys calabaricus 27687 Chordata Chordata 135 7.37e-36   NR XP_051791274.1 27687 g10998 i0 78.9 6.99145299145299 90 18 76.1 1 41 307 115 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 2454 135 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;