RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA753704" and tax_clade = "SAR86 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR86 cluster · 2 ✖

bioproject 1

  • PRJNA753704 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31927647 31927647 PRJNA753704_P_NODE_14797_length_311_cov_2.159664_g14436_i0 PRJNA753704 14797 311 2.159664 6.71655504 Pseudomonadota 1224 Bacteria Bacteria 70.9 1.12e-11   NR PCI80785.1 2030880 g14436 i0 47.7 2.53697749196141 88 45 83.9 1 1 261 725 812 PCI80785.1 MAG: hypothetical protein COB20_02715 [SAR86 cluster bacterium] diamond 789 71.6 0.990223463687151 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium
32865555 32865555 PRJNA753704_P_NODE_29380_length_234_cov_3.062112_g29019_i0 PRJNA753704 29380 234 3.062112 7.16534208 SAR86 cluster bacterium 2030880 Bacteria Bacteria 131 1.7800000000000002e-33   NR PCJ42885.1 2030880 g29019 i0 95.7 2.67948717948718 69 3 88.5 0 2 208 990 1058 PCJ42885.1 MAG: DEAD/DEAH box helicase [SAR86 cluster bacterium] diamond 627 131 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;