RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA753151" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA753151 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26672701 26672701 PRJNA753151_S_NODE_117021_length_265_cov_2.635135_g114731_i0 PRJNA753151 117021 265 2.635135 6.98310775 Helicobacter pylori 210 Bacteria Bacteria 40 0.0421   NR GAA9171889.1 210 g114731 i0 59 0.441509433962264 39 13 40.8 2 153 46 7 45 GAA9171889.1 hypothetical protein Kyoto190A_5790 [Helicobacter pylori] diamond 117 40 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27937429 27937429 PRJNA753151_S_NODE_99745_length_283_cov_2.412500_g97455_i0 PRJNA753151 99745 283 2.4125 6.827375 Aliarcobacter sp. 2321116 Bacteria Bacteria 43.1 0.0434   NR MDD2896364.1 2321116 g97455 i0 36.2 0.731448763250883 69 38 66.8 1 50 238 363 431 MDD2896364.1 PAS domain-containing sensor histidine kinase [Aliarcobacter sp.] diamond 207 43.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter sp.
28915843 28915843 PRJNA753151_S_NODE_213368_length_197_cov_1.753247_g211078_i0 PRJNA753151 213368 197 1.753247 3.45389659 Helicobacter pylori 210 Bacteria Bacteria 40.8 0.0165   NR GAA6912846.1 210 g211078 i0 69 0.441624365482233 29 7 44.2 2 137 51 40 66 GAA6912846.1 hypothetical protein Kyoto207A_3070 [Helicobacter pylori] diamond 87 40.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31475106 31475106 PRJNA753151_S_NODE_286856_length_164_cov_5.066116_g284566_i0 PRJNA753151 286856 164 5.066116 8.30843024 Helicobacter pylori 210 Bacteria Bacteria 53.9 1.26e-7   NR GAA8686254.1 210 g284566 i0 96.8 0.567073170731707 31 1 56.7 0 111 19 1 31 GAA8686254.1 hypothetical protein Kyoto145A_1480 [Helicobacter pylori] diamond 93 53.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;