RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA753151" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA753151 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29358224 29358224 PRJNA753151_S_NODE_152569_length_235_cov_2.682292_g150279_i0 PRJNA753151 152569 235 2.682292 6.3033862 Coriobacteriales bacterium 2478480 Bacteria Bacteria 60.8 3.3e-10   NR MDR0308671.1 2478480 g150279 i0 48.9 0.6 47 24 60 0 1 141 4 50 MDR0308671.1 ricin-type beta-trefoil lectin domain protein [Coriobacteriales bacterium] diamond 141 60.8 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Coriobacteriales     Coriobacteriales bacterium
30179155 30179155 PRJNA753151_S_NODE_299052_length_160_cov_1.923077_g296762_i0 PRJNA753151 299052 160 1.923077 3.0769232 Cutibacterium acnes 1747 Bacteria Bacteria 38.9 0.0464   NR MES6043932.1 1747 g296762 i0 50 0.6 32 16 60 0 29 124 5 36 MES6043932.1 hypothetical protein [Cutibacterium acnes] diamond 96 38.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;