RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA753151" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA753151 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29641999 29641999 PRJNA753151_S_NODE_317650_length_154_cov_1.621622_g315360_i0 PRJNA753151 317650 154 1.621622 2.49729788 Polysphondylium violaceum 133409 Evosea other_Eukaryota 66.2 2.61e-11   NR KAF2072109.1 133409 g315360 i0 66.7 1.98701298701299 51 17 99.4 0 1 153 197 247 KAF2072109.1 hypothetical protein CYY_006583 [Polysphondylium violaceum] diamond 306 66.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
30115973 30115973 PRJNA753151_S_NODE_253152_length_178_cov_1.333333_g250862_i0 PRJNA753151 253152 178 1.333333 2.37333274 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 51.6 2.78e-6   NR XP_004353726.1 1257118 g250862 i0 76.7 0.50561797752809 30 7 50.6 0 3 92 51 80 XP_004353726.1 LIM domain containing protein [Acanthamoeba castellanii str. Neff] diamond 90 51.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31506835 31506835 PRJNA753151_S_NODE_166316_length_225_cov_3.461538_g164026_i0 PRJNA753151 166316 225 3.461538 7.7884605 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 73.2 2.96e-14   NR PRP87369.1 1890364 g164026 i0 52.4 1.09333333333333 82 30 98.7 3 224 3 69 149 PRP87369.1 hypothetical protein PROFUN_01631 [Planoprotostelium fungivorum] diamond 246 73.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;