RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA753112" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA753112 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7107631 7107631 PRJNA753112_P_NODE_22286_length_288_cov_1.562791_g21944_i0 PRJNA753112 22286 288 1.562791 4.50083808 Metazoa 33208 Chordata Chordata 142 2.51e-38   NR Q9GR88.1 7723 g21944 i0 69.1 58.7083333333333 94 29 97.9 0 1 282 154 247 Q9GR88.1 RecName: Full=Eukaryotic peptide chain release factor subunit 1; Short=Eukaryotic release factor 1; Short=eRF1 [Polyandrocarpa misakiensis] diamond 16908 143 0.993006993006993 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Polyandrocarpa Polyandrocarpa misakiensis
16031719 16031719 PRJNA753112_P_NODE_29493_length_251_cov_1.612360_g29151_i0 PRJNA753112 29493 251 1.61236 4.0470236 root 1 Root_unresolved Root_unresolved 110 8.44e-26   NR XP_048680898.1 8467 g29151 i0 100 48.3107569721116 50 0 59.8 0 249 100 2071 2120 XP_048680898.1 serine/threonine-protein kinase mTOR isoform X4 [Caretta caretta] diamond 12126 111 0.990990990990991 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Caretta Caretta caretta
29462407 29462407 PRJNA753112_P_NODE_28870_length_253_cov_0.866667_g28528_i0 PRJNA753112 28870 253 0.866667 2.19266751 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 119 5.8399999999999995e-30   NR NXI53838.1 176938 g28528 i0 67.5 21.6403162055336 83 27 98.4 0 2 250 299 381 NXI53838.1 VATB1 ATPase [Chloroceryle aenea] diamond 5475 120 0.991666666666667 Eukaryota Opisthokonta Metazoa Chordata Aves Coraciiformes Cerylidae Chloroceryle Chloroceryle aenea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;