RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "diamond", bioproject = "PRJNA753112" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA753112 · 10 ✖

analysis 1

  • diamond · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28726672 28726672 PRJNA753112_P_NODE_32047_length_245_cov_1.848837_g31705_i0 PRJNA753112 32047 245 1.848837 4.52965065 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 89 2.87e-20   NR WP_409477129.1 3386277 g31705 i0 84.4 0.551020408163265 45 7 55.1 0 110 244 1 45 WP_409477129.1 GNAT family N-acetyltransferase [Pseudobdellovibrio sp. HCB154] diamond 135 89 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
28915840 28915840 PRJNA753112_P_NODE_6088_length_553_cov_2.033333_g5749_i0 PRJNA753112 6088 553 2.033333 11.24433149 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 68.9 5.86e-11   NR MEK7358298.1 3034175 g5749 i0 33.8 1.73598553345389 154 92 80.8 5 74 520 15 163 MEK7358298.1 hypothetical protein [Bdellovibrionota bacterium] diamond 960 68.9 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29484191 29484191 PRJNA753112_P_NODE_33310_length_243_cov_0.917647_g32968_i0 PRJNA753112 33310 243 0.917647 2.22988221 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 144 2.54e-41   NR WP_409480271.1 3386277 g32968 i0 85 0.987654320987654 80 12 98.8 0 242 3 42 121 WP_409480271.1 PAQR family membrane homeostasis protein TrhA [Pseudobdellovibrio sp. HCB154] diamond 240 144 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
29904931 29904931 PRJNA753112_P_NODE_16231_length_337_cov_1.181818_g15889_i0 PRJNA753112 16231 337 1.181818 3.98272666 Pseudobdellovibrio 2862745 Bacteria Bacteria 41.2 0.0462   NR MFN3697799.1 2862747 g15889 i0 92 0.560830860534125 25 2 22.3 0 302 228 1 25 MFN3697799.1 hypothetical protein [Pseudobdellovibrio sp.] diamond 189 41.6 0.990384615384615 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp.
30779588 30779588 PRJNA753112_P_NODE_19074_length_311_cov_1.798319_g18732_i0 PRJNA753112 19074 311 1.798319 5.59277209 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 133 1.28e-34   NR MES2802057.1 3034175 g18732 i0 56.4 0.97427652733119 101 44 97.4 0 3 305 115 215 MES2802057.1 hypothetical protein [Bdellovibrionota bacterium] diamond 303 133 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
30779596 30779596 PRJNA753112_P_NODE_33594_length_242_cov_0.923077_g33252_i0 PRJNA753112 33594 242 0.923077 2.23384634 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 86.7 2.44e-19   NR WP_409478056.1 3386277 g33252 i0 57.1 0.954545454545455 77 32 94.2 1 230 3 22 98 WP_409478056.1 hypothetical protein [Pseudobdellovibrio sp. HCB154] diamond 231 86.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
31095478 31095478 PRJNA753112_P_NODE_33555_length_242_cov_0.923077_g33213_i0 PRJNA753112 33555 242 0.923077 2.23384634 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 127 5.03e-32   NR WP_409479706.1 3386277 g33213 i0 77.5 0.991735537190083 80 18 99.2 0 1 240 233 312 WP_409479706.1 hypothetical protein [Pseudobdellovibrio sp. HCB154] diamond 240 127 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
31411775 31411775 PRJNA753112_P_NODE_34516_length_232_cov_2.301887_g34174_i0 PRJNA753112 34516 232 2.301887 5.34037784 Bdellovibrio 958 Bacteria Bacteria 111 3.79e-29   NR WP_347357987.1 958 g34174 i0 76.3 0.982758620689655 76 18 98.3 0 228 1 8 83 WP_347357987.1 MULTISPECIES: hypothetical protein [Bdellovibrio] diamond 228 111 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio  
32139351 32139351 PRJNA753112_P_NODE_31678_length_246_cov_1.346821_g31336_i0 PRJNA753112 31678 246 1.346821 3.31317966 Pseudobdellovibrio sp. 2862747 Bacteria Bacteria 118 1.06e-29   NR MCM2354673.1 2862747 g31336 i0 86.7 1.91463414634146 75 10 91.5 0 2 226 277 351 MCM2354673.1 hypothetical protein [Pseudobdellovibrio sp.] diamond 471 118 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp.
32392434 32392434 PRJNA753112_P_NODE_28679_length_253_cov_1.616667_g28337_i0 PRJNA753112 28679 253 1.616667 4.09016751 Bdellovibrio sp. 28-41-41 1970323 Bacteria Bacteria 134 1.39e-34   NR OYZ23524.1 1970323 g28337 i0 73.8 2.98814229249012 84 22 99.6 0 2 253 126 209 OYZ23524.1 MAG: hypothetical protein B7Y39_04250 [Bdellovibrio sp. 28-41-41] diamond 756 134 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. 28-41-41

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;