RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA753112" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA753112 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18580800 18580800 PRJNA753112_P_NODE_24775_length_274_cov_1.184080_g24433_i0 PRJNA753112 24775 274 1.18408 3.2443792 root 1 Root_unresolved Root_unresolved 72.8 9.77e-13   NR BAS27306.1 1555112 g24433 i0 48.3 1.88321167883212 87 43 94.2 2 17 274 218 303 BAS27306.1 hypothetical protein LIP_1457 [Limnochorda pilosa] diamond 516 72.8 1 Bacteria   Bacillati Bacillota Limnochordia Limnochordales Limnochordaceae Limnochorda Limnochorda pilosa
27084552 27084552 PRJNA753112_P_NODE_29302_length_252_cov_0.871508_g28960_i0 PRJNA753112 29302 252 0.871508 2.19620016 Bacilli bacterium 1903720 Bacteria Bacteria 66.6 1.57e-10   NR MEG0407679.1 1903720 g28960 i0 53 0.785714285714286 66 30 78.6 1 53 250 144 208 MEG0407679.1 hypothetical protein [Bacilli bacterium] diamond 198 66.6 1 Bacteria   Bacillati Bacillota Bacilli       Bacilli bacterium
27621707 27621707 PRJNA753112_P_NODE_13724_length_367_cov_1.054422_g13382_i0 PRJNA753112 13724 367 1.054422 3.8697287399999998 Oscillospiraceae bacterium 2485925 Bacteria Bacteria 46.2 0.00865   NR MBE6951160.1 2485925 g13382 i0 32.9 0.596730245231608 73 48 59.7 1 327 109 17 88 MBE6951160.1 hypothetical protein [Oscillospiraceae bacterium] diamond 219 46.2 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium
28568711 28568711 PRJNA753112_P_NODE_19207_length_310_cov_1.468354_g18865_i0 PRJNA753112 19207 310 1.468354 4.5518974 Firmicutes bacterium ADurb.Bin193 1852885 Bacteria Bacteria 48.9 4.62e-4   NR OQB13730.1 1852885 g18865 i0 54.3 0.338709677419355 35 16 33.9 0 7 111 181 215 OQB13730.1 MAG: KWG Leptospira [Firmicutes bacterium ADurb.Bin193] diamond 105 48.9 1 Bacteria   Bacillati Bacillota         Firmicutes bacterium ADurb.Bin193
30432441 30432441 PRJNA753112_P_NODE_27313_length_260_cov_1.668449_g26971_i0 PRJNA753112 27313 260 1.668449 4.3379674 Tissierellales bacterium 2053631 Bacteria Bacteria 46.2 0.00266   NR MCT4662835.1 2053631 g26971 i0 42.9 0.646153846153846 56 31 64.6 1 6 173 64 118 MCT4662835.1 ATPase, T2SS/T4P/T4SS family [Tissierellales bacterium] diamond 168 46.2 1 Bacteria   Bacillati Bacillota Tissierellia Tissierellales     Tissierellales bacterium
32718003 32718003 PRJNA753112_P_NODE_34560_length_231_cov_2.936709_g34218_i0 PRJNA753112 34560 231 2.936709 6.78379779 Gudongella 2692382 Bacteria Bacteria 81.6 2.69e-16   NR MCR3955806.1 2692384 g34218 i0 52.1 2.81818181818182 73 35 94.8 0 222 4 192 264 MCR3955806.1 lysophospholipase [Gudongella sp.] diamond 651 82 0.995121951219512 Bacteria   Bacillati Bacillota Tissierellia Tissierellales Tissierellaceae Gudongella Gudongella sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;