RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA753112" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA753112 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2004813 2004813 PRJNA753112_P_NODE_12122_length_390_cov_1.968454_g11780_i0 PRJNA753112 12122 390 1.968454 7.6769706 Eucoccidiorida 75739 SAR_Eukaryotes SAR_Eukaryotes 138 3.68e-37   NR OEH77157.1 88456 g11780 i0 73 3.43846153846154 89 24 68.5 0 382 116 209 297 OEH77157.1 60s ribosomal protein [Cyclospora cayetanensis] diamond 1341 138 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
13482922 13482922 PRJNA753112_P_NODE_28451_length_254_cov_1.723757_g28109_i0 PRJNA753112 28451 254 1.723757 4.37834278 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 105 4.969999999999999e-24   NR XP_067715094.1 5871 g28109 i0 66.2 10.1102362204724 74 25 87.4 0 253 32 1142 1215 XP_067715094.1 eukaryotic translation initiation factor [Babesia caballi] diamond 2568 106 0.990566037735849 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia caballi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;