RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA753112" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA753112 · 12 ✖

analysis 1

  • diamond · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8854709 8854709 PRJNA753112_P_NODE_33307_length_243_cov_0.917647_g32965_i0 PRJNA753112 33307 243 0.917647 2.22988221 Nocardioides jiangsuensis 2866161 Bacteria Bacteria 122 1.98e-30   NR WP_221026628.1 2866161 g32965 i0 86.1 0.975308641975309 79 11 97.5 0 238 2 289 367 WP_221026628.1 potassium-transporting ATPase subunit KdpA [Nocardioides jiangsuensis] diamond 237 122 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides jiangsuensis
24955709 24955709 PRJNA753112_P_NODE_32340_length_245_cov_0.906977_g31998_i0 PRJNA753112 32340 245 0.906977 2.22209365 Microbacterium ginsengisoli 400772 Bacteria Bacteria 166 2.58e-48   NR WP_045247539.1 400772 g31998 i0 97.5 0.979591836734694 80 2 98 0 240 1 216 295 WP_045247539.1 Rv2578c family radical SAM protein [Microbacterium ginsengisoli] diamond 240 166 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium ginsengisoli
26704486 26704486 PRJNA753112_P_NODE_28941_length_253_cov_0.866667_g28599_i0 PRJNA753112 28941 253 0.866667 2.19266751 Nocardia sp. alder85J 2862949 Bacteria Bacteria 49.7 1.43e-4   NR WP_323138010.1 2862949 g28599 i0 40.2 1.94466403162055 82 39 96 3 10 252 219 291 WP_323138010.1 metal-dependent hydrolase [Nocardia sp. alder85J] diamond 492 49.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia sp. alder85J
27337478 27337478 PRJNA753112_P_NODE_29923_length_250_cov_1.514124_g29581_i0 PRJNA753112 29923 250 1.514124 3.78531 Nocardioides aquiterrae 203799 Bacteria Bacteria 58.2 8.81e-8   NR GAA1164235.1 203799 g29581 i0 58.1 0.744 62 25 73.2 1 31 213 31 92 GAA1164235.1 hypothetical protein GCM10009606_47390 [Nocardioides aquiterrae] diamond 186 58.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides aquiterrae
27400675 27400675 PRJNA753112_P_NODE_31683_length_246_cov_1.317919_g31341_i0 PRJNA753112 31683 246 1.317919 3.24208074 Streptomyces tendae 1932 Bacteria Bacteria 44.7 0.00811   NR MFJ3044153.1 1932 g31341 i0 59.5 0.451219512195122 37 13 45.1 1 131 241 714 748 MFJ3044153.1 hypothetical protein [Streptomyces tendae] diamond 111 44.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces tendae
27558222 27558222 PRJNA753112_P_NODE_8084_length_480_cov_2.732187_g7742_i0 PRJNA753112 8084 480 2.732187 13.1144976 Curtobacterium sp. ER1/6 1891920 Bacteria Bacteria 45.1 0.0496   NR OEI69057.1 1891920 g7742 i0 33.3 0.9375 150 88 89.4 3 17 445 36 180 OEI69057.1 hypothetical protein Cus16_0887 [Curtobacterium sp. ER1/6] diamond 450 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. ER1/6
28032132 28032132 PRJNA753112_P_NODE_24765_length_274_cov_1.363184_g24423_i0 PRJNA753112 24765 274 1.363184 3.73512416 Micromonospora aurantiaca 47850 Bacteria Bacteria 45.1 0.0056   NR WP_162881542.1 47850 g24423 i0 38.2 1.80656934306569 55 32 58 1 36 194 144 198 WP_162881542.1 DUF4352 domain-containing protein [Micromonospora aurantiaca] diamond 495 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora aurantiaca (nom. illeg.)
28032133 28032133 PRJNA753112_P_NODE_27565_length_259_cov_1.268817_g27223_i0 PRJNA753112 27565 259 1.268817 3.28623603 Saccharothrix variisporea 543527 Bacteria Bacteria 43.5 0.025   NR WP_246029499.1 543527 g27223 i0 40 0.694980694980695 60 32 64.9 2 92 259 884 943 WP_246029499.1 hypothetical protein [Saccharothrix variisporea] diamond 180 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharothrix Saccharothrix variisporea
30589916 30589916 PRJNA753112_P_NODE_11693_length_397_cov_2.842593_g11351_i0 PRJNA753112 11693 397 2.842593 11.28509421 Mycolicibacterium brumae 85968 Bacteria Bacteria 49.3 0.00106   NR WP_090587324.1 85968 g11351 i0 33 0.755667506297229 100 62 74.8 3 327 31 809 904 WP_090587324.1 arabinosyltransferase domain-containing protein [Mycolicibacterium brumae] diamond 300 49.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium brumae
31538417 31538417 PRJNA753112_P_NODE_28756_length_253_cov_0.866667_g28414_i0 PRJNA753112 28756 253 0.866667 2.19266751 Streptomyces sp. MBT84 1488414 Bacteria Bacteria 42.7 0.0417   NR MBW8705193.1 1488414 g28414 i0 40.3 0.735177865612648 62 34 73.5 1 66 251 704 762 MBW8705193.1 Cyclic di-GMP phosphodiesterase Gmr [Streptomyces sp. MBT84] diamond 186 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. MBT84
32592123 32592123 PRJNA753112_P_NODE_17539_length_324_cov_1.657371_g17197_i0 PRJNA753112 17539 324 1.657371 5.36988204 Streptomyces 1883 Bacteria Bacteria 56.2 1.62e-6   NR WP_016643678.1 47760 g17197 i0 52.5 4.69444444444444 61 23 50.9 2 322 158 138 198 WP_016643678.1 Kelch repeat-containing protein [Streptomyces aurantiacus] diamond 1521 56.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces aurantiacus
32644858 32644858 PRJNA753112_P_NODE_26380_length_265_cov_1.625000_g26038_i0 PRJNA753112 26380 265 1.625 4.30625 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 77.4 3.06e-14   NR HLN17668.1 2201156 g26038 i0 68.6 2.11698113207547 51 16 57.7 0 264 112 520 570 HLN17668.1 amidohydrolase family protein [Acidimicrobiales bacterium] diamond 561 77.4 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;