RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA752572" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA752572 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27210716 27210716 PRJNA752572_P_NODE_74542_length_315_cov_2.342857_g74035_i0 PRJNA752572 74542 315 2.342857 7.37999955 Truepera sp. 2478917 Bacteria Bacteria 52 2.97e-5   NR MDE0527816.1 2478917 g74035 i0 53.7 1.76190476190476 41 19 39 0 285 163 39 79 MDE0527816.1 ankyrin repeat domain-containing protein [Truepera sp.] diamond 555 52 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera sp.
28852719 28852719 PRJNA752572_P_NODE_212848_length_182_cov_1.387755_g212341_i0 PRJNA752572 212848 182 1.387755 2.5257141 Synergistaceae bacterium 2053624 Bacteria Bacteria 47 5.33e-4   NR MDR1133106.1 2053624 g212341 i0 36.2 4.78021978021978 58 31 95.6 1 8 181 1149 1200 MDR1133106.1 response regulator [Synergistaceae bacterium] diamond 870 47 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30021433 30021433 PRJNA752572_P_NODE_220031_length_179_cov_1.243056_g219524_i0 PRJNA752572 220031 179 1.243056 2.22507024 Allomeiothermus silvanus 52022 Bacteria Bacteria 49.3 6.79e-5   NR WP_013158102.1 52022 g219524 i0 45.8 3.93854748603352 48 23 75.4 1 144 10 93 140 WP_013158102.1 serine/threonine-protein kinase [Allomeiothermus silvanus] diamond 705 49.3 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Allomeiothermus Allomeiothermus silvanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;