RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA752572" and tax_kingdom = "Thermoproteati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermoproteati · 4 ✖

bioproject 1

  • PRJNA752572 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24955191 24955191 PRJNA752572_P_NODE_53920_length_372_cov_3.409496_g53413_i0 PRJNA752572 53920 372 3.409496 12.68332512 root 1 Root_unresolved Root_unresolved 173 1.4699999999999996e-52   NR WP_048057560.1 41980 g53413 i0 63.6 14.1209677419355 121 44 97.6 0 364 2 6 126 WP_048057560.1 MULTISPECIES: peptide-methionine (S)-S-oxide reductase MsrA [Metallosphaera] diamond 5253 173 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera  
28325903 28325903 PRJNA752572_P_NODE_240106_length_171_cov_1.992647_g239599_i0 PRJNA752572 240106 171 1.992647 3.40742637 Pyrobaculum 2276 Archaea Archaea 50.4 8.92e-6   NR WP_011901773.1 2276 g239599 i0 73.1 2.78947368421053 26 7 45.6 0 1 78 120 145 WP_011901773.1 MULTISPECIES: 30S ribosomal protein S12 [Pyrobaculum] diamond 477 50.4 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum  
31095431 31095431 PRJNA752572_P_NODE_142495_length_224_cov_2.349206_g141988_i0 PRJNA752572 142495 224 2.349206 5.26222144 Desulfurococcaceae archaeon 2184738 Archaea Archaea 59.7 2.08e-8   NR PWV37465.1 2184738 g141988 i0 40.5 3.96428571428571 74 44 99.1 0 222 1 74 147 PWV37465.1 MAG: membrane protease subunit, stomatin/prohibitin-like protein [Desulfurococcaceae archaeon] diamond 888 59.7 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae   Desulfurococcaceae archaeon
32202599 32202599 PRJNA752572_P_NODE_24658_length_548_cov_1.914230_g24192_i0 PRJNA752572 24658 548 1.91423 10.4899804 Vulcanisaeta sp. 2020871 Archaea Archaea 139 1.41e-35   NR MFP3236626.1 2020871 g24192 i0 43.4 0.996350364963504 182 99 99.1 3 543 1 92 270 MFP3236626.1 aspartate aminotransferase family protein [Vulcanisaeta sp.] diamond 546 139 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;