RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA751877" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA751877 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16029045 16029045 PRJNA751877_P_NODE_23873_length_249_cov_0.875000_g23751_i0 PRJNA751877 23873 249 0.875 2.17875 Planctomycetota bacterium 2026780 Bacteria Bacteria 69.7 2.35e-13   NR MDB5349418.1 2026780 g23751 i0 77.3 0.530120481927711 44 10 53 0 115 246 2 45 MDB5349418.1 acyP [Planctomycetota bacterium] diamond 132 69.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31126663 31126663 PRJNA751877_P_NODE_22535_length_251_cov_0.865169_g22413_i0 PRJNA751877 22535 251 0.865169 2.17157419 Planctomycetota bacterium 2026780 Bacteria Bacteria 111 5.74e-28   NR HYF48200.1 2026780 g22413 i0 58 1.87649402390438 81 34 96.8 0 3 245 162 242 HYF48200.1 phytanoyl-CoA dioxygenase family protein [Planctomycetota bacterium] diamond 471 111 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31579847 31579847 PRJNA751877_P_NODE_25496_length_247_cov_0.885057_g25374_i0 PRJNA751877 25496 247 0.885057 2.18609079 Pseudomonadati 3379134 Bacteria Bacteria 42.4 0.0175   NR WP_162669483.1 1210884 g25374 i0 44.2 1.84615384615385 43 24 52.2 0 2 130 69 111 WP_162669483.1 hypothetical protein [Gemmata massiliana] diamond 456 42.7 0.992974238875878 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata massiliana
31854358 31854358 PRJNA751877_P_NODE_17777_length_279_cov_1.495146_g17655_i0 PRJNA751877 17777 279 1.495146 4.17145734 Gemmataceae bacterium 2052164 Bacteria Bacteria 118 1.93e-29   NR MFQ3648825.1 2052164 g17655 i0 63.4 1 93 33 98.9 1 277 2 255 347 MFQ3648825.1 ROK family transcriptional regulator [Gemmataceae bacterium] diamond 279 118 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
32329369 32329369 PRJNA751877_P_NODE_21279_length_257_cov_1.255435_g21157_i0 PRJNA751877 21279 257 1.255435 3.22646795 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 187 1.8299999999999994e-55   NR HCP12131.1 2026779 g21157 i0 100 0.992217898832685 85 0 99.2 0 2 256 145 229 HCP12131.1 membrane-bound O-acyltransferase family protein [Planctomycetaceae bacterium] diamond 255 187 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium
32392322 32392322 PRJNA751877_P_NODE_17739_length_280_cov_1.000000_g17617_i0 PRJNA751877 17739 280 1 2.8 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 44.7 0.0112   NR HQX51038.1 2026779 g17617 i0 36.1 0.771428571428571 72 45 77.1 1 242 27 64 134 HQX51038.1 branched-chain amino acid ABC transporter permease [Planctomycetaceae bacterium] diamond 216 44.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;