RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA751877" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA751877 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10930319 10930319 PRJNA751877_P_NODE_23769_length_249_cov_1.312500_g23647_i0 PRJNA751877 23769 249 1.3125 3.268125 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 118 3.81e-29   NR TMW64105.1 41045 g23647 i0 69.5 17.7831325301205 82 25 98.8 0 2 247 37 118 TMW64105.1 hypothetical protein Poli38472_014222 [Pythium oligandrum] diamond 4428 119 0.991596638655462 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
29936453 29936453 PRJNA751877_P_NODE_9351_length_355_cov_1.092199_g9229_i0 PRJNA751877 9351 355 1.092199 3.87730645 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 114 9.06e-28   NR XP_067822191.1 4779 g9229 i0 57.6 27.9380281690141 92 39 77.7 0 276 1 186 277 XP_067822191.1 uncharacterized protein CCR75_008787 [Bremia lactucae] diamond 9918 114 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
30694597 30694597 PRJNA751877_P_NODE_22473_length_251_cov_0.865169_g22351_i0 PRJNA751877 22473 251 0.865169 2.17157419 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 85.9 2.83e-18   NR OWZ03480.1 4795 g22351 i0 53.4 12.2151394422311 73 34 87.3 0 25 243 42 114 OWZ03480.1 hypothetical protein PHMEG_00024782 [Phytophthora megakarya] diamond 3066 86.7 0.990772779700115 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;