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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA751877" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA751877 · 13 ✖

analysis 1

  • diamond · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17304424 17304424 PRJNA751877_P_NODE_2174_length_568_cov_2.424242_g2053_i0 PRJNA751877 2174 568 2.424242 13.76969456 Opisthokonta 33154 Chordata Chordata 81.6 2.23e-16   NR CAG5105596.1 34765 g2053 i0 69.1 3.21654929577465 110 34 58.1 0 21 350 1 110 CAG5105596.1 Oidioi.mRNA.OKI2018_I69.chr1.g2273.t1.cds [Oikopleura dioica] diamond 1827 81.6 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
27115766 27115766 PRJNA751877_P_NODE_7902_length_375_cov_1.019868_g7780_i0 PRJNA751877 7902 375 1.019868 3.824505 Phaenicophaeus curvirostris 33595 Chordata Chordata 176 1.37e-51   NR XP_069737843.1 33595 g7780 i0 66.7 27.52 123 41 98.4 0 373 5 128 250 XP_069737843.1 cytochrome c1, heme protein, mitochondrial-like [Phaenicophaeus curvirostris] diamond 10320 176 1 Eukaryota Opisthokonta Metazoa Chordata Aves Cuculiformes Cuculidae Phaenicophaeus Phaenicophaeus curvirostris
27463727 27463727 PRJNA751877_P_NODE_25523_length_247_cov_0.885057_g25401_i0 PRJNA751877 25523 247 0.885057 2.18609079 Peromyscus leucopus 10041 Chordata Chordata 47.4 7.69e-4   NR XP_037056799.1 10041 g25401 i0 60 1.82186234817814 50 20 60.7 0 246 97 164 213 XP_037056799.1 LOW QUALITY PROTEIN: 40S ribosomal protein S6-like [Peromyscus leucopus] diamond 450 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Peromyscus Peromyscus leucopus
28000565 28000565 PRJNA751877_P_NODE_25105_length_248_cov_0.880000_g24983_i0 PRJNA751877 25105 248 0.88 2.1824 Sciurus carolinensis 30640 Chordata Chordata 49.7 7.87e-5   NR MBZ3870293.1 30640 g24983 i0 50.9 1.39112903225806 57 26 66.5 1 8 172 96 152 MBZ3870293.1 60S acidic ribosomal protein P2 [Sciurus carolinensis] diamond 345 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Sciurus Sciurus carolinensis
28947832 28947832 PRJNA751877_P_NODE_16988_length_284_cov_1.379147_g16866_i0 PRJNA751877 16988 284 1.379147 3.91677748 Ranitomeya imitator 111125 Chordata Chordata 76.3 1.01e-13   NR CAJ0964531.1 111125 g16866 i0 50 3.08450704225352 68 32 71.8 1 3 206 759 824 CAJ0964531.1 unnamed protein product [Ranitomeya imitator] diamond 876 76.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
29799970 29799970 PRJNA751877_P_NODE_24731_length_248_cov_0.880000_g24609_i0 PRJNA751877 24731 248 0.88 2.1824 Candoia aspera 51853 Chordata Chordata 48.5 3.63e-4   NR XP_063147205.1 51853 g24609 i0 50 1.23387096774194 36 18 43.5 0 114 7 284 319 XP_063147205.1 uncharacterized protein LOC134488789 [Candoia aspera] diamond 306 48.5 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Boidae Candoia Candoia aspera
29841624 29841624 PRJNA751877_P_NODE_6751_length_394_cov_2.398754_g6629_i0 PRJNA751877 6751 394 2.398754 9.45109076 Metazoa 33208 Chordata Chordata 56.6 2.32e-6   NR XP_021482117.1 10047 g6629 i0 35.7 1.43908629441624 98 59 74.6 2 23 316 110 203 XP_021482117.1 cathepsin 8-like [Meriones unguiculatus] diamond 567 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Meriones Meriones unguiculatus
30337585 30337585 PRJNA751877_P_NODE_19552_length_268_cov_1.287179_g19430_i0 PRJNA751877 19552 268 1.287179 3.44963972 Polypterus senegalus 55291 Chordata Chordata 55.5 1.56e-6   NR KAG2468153.1 55291 g19430 i0 71.4 1.72388059701493 35 10 39.2 0 164 268 239 273 KAG2468153.1 TC1A transposase, partial [Polypterus senegalus] diamond 462 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31538311 31538311 PRJNA751877_P_NODE_29616_length_242_cov_0.869822_g29494_i0 PRJNA751877 29616 242 0.869822 2.10496924 Xenopus tropicalis 8364 Chordata Chordata 52 1.46e-5   NR NP_001005817.1 8364 g29494 i0 41 0.966942148760331 78 44 94.2 1 2 229 18 95 NP_001005817.1 oxidoreductase HTATIP2 [Xenopus tropicalis] diamond 234 52 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
32139228 32139228 PRJNA751877_P_NODE_17478_length_281_cov_1.447115_g17356_i0 PRJNA751877 17478 281 1.447115 4.06639315 Erpetoichthys calabaricus 27687 Chordata Chordata 53.9 6.94e-6   NR XP_028670689.1 27687 g17356 i0 35.2 0.939501779359431 88 57 94 0 272 9 719 806 XP_028670689.1 major vault protein [Erpetoichthys calabaricus] diamond 264 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
32465726 32465726 PRJNA751877_P_NODE_6259_length_404_cov_1.628399_g6137_i0 PRJNA751877 6259 404 1.628399 6.57873196 Branchiostoma 7737 Chordata Chordata 85.5 1.25e-16   NR XP_035689996.1 7739 g6137 i0 66.2 1.4480198019802 65 21 47.5 1 399 208 296 360 XP_035689996.1 conditioned medium factor receptor 1-like [Branchiostoma floridae] diamond 585 85.5 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32613549 32613549 PRJNA751877_P_NODE_25220_length_247_cov_1.666667_g25098_i0 PRJNA751877 25220 247 1.666667 4.11666749 Trichechus manatus latirostris 127582 Chordata Chordata 43.1 0.0302   NR XP_023587948.1 127582 g25098 i0 32.9 0.995951417004049 82 54 98.4 1 247 5 1445 1526 XP_023587948.1 intermembrane lipid transfer protein VPS13D isoform X4 [Trichechus manatus latirostris] diamond 246 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Sirenia Trichechidae Trichechus Trichechus manatus
32833926 32833926 PRJNA751877_P_NODE_24200_length_249_cov_0.875000_g24078_i0 PRJNA751877 24200 249 0.875 2.17875 Branchiostoma lanceolatum 7740 Chordata Chordata 46.2 0.00239   NR XP_066266064.1 7740 g24078 i0 65.5 0.349397590361446 29 10 34.9 0 3 89 11 39 XP_066266064.1 protein phosphatase 1 regulatory subunit 12A-like isoform X6 [Branchiostoma lanceolatum] diamond 87 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;