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contig_metadata

20 rows where analysis = "diamond", bioproject = "PRJNA751877" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 20 ✖

tax_kingdom 1

bioproject 1

  • PRJNA751877 · 20 ✖

analysis 1

  • diamond · 20 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3277808 3277808 PRJNA751877_P_NODE_26903_length_245_cov_0.895349_g26781_i0 PRJNA751877 26903 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 148 5.73e-44   NR MBX2988187.1 2026715 g26781 i0 91.1 4.8734693877551 79 7 96.7 0 243 7 30 108 MBX2988187.1 nucleoside-diphosphate kinase [Pseudobdellovibrionaceae bacterium] diamond 1194 148 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
26809616 26809616 PRJNA751877_P_NODE_27921_length_244_cov_0.900585_g27799_i0 PRJNA751877 27921 244 0.900585 2.1974274 Bdellovibrio 958 Bacteria Bacteria 75.9 7.75e-14   NR WP_347357380.1 958 g27799 i0 74.5 1.15573770491803 47 12 57.8 0 242 102 494 540 WP_347357380.1 MULTISPECIES: lytic transglycosylase domain-containing protein [Bdellovibrio] diamond 282 75.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio  
28505501 28505501 PRJNA751877_P_NODE_30047_length_241_cov_0.916667_g29925_i0 PRJNA751877 30047 241 0.916667 2.20916747 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 132 5.78e-36   NR MBK9324357.1 2026715 g29925 i0 94.2 5.15352697095436 69 4 85.9 0 35 241 1 69 MBK9324357.1 LysR family transcriptional regulator [Pseudobdellovibrionaceae bacterium] diamond 1242 132 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29484067 29484067 PRJNA751877_P_NODE_20170_length_264_cov_1.612565_g20048_i0 PRJNA751877 20170 264 1.612565 4.2571716 Oligoflexia bacterium 2599941 Bacteria Bacteria 86.7 1.56e-17   NR MCM2279095.1 2599941 g20048 i0 51.3 0.886363636363636 78 36 86.4 1 236 9 421 498 MCM2279095.1 hydroxymethylbilane synthase [Oligoflexia bacterium] diamond 234 86.7 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
29515696 29515696 PRJNA751877_P_NODE_19710_length_267_cov_1.298969_g19588_i0 PRJNA751877 19710 267 1.298969 3.46824723 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 140 1.98e-38   NR MFN8791039.1 2053517 g19588 i0 78.2 1.96629213483146 87 19 97.8 0 265 5 92 178 MFN8791039.1 type IV pilus assembly protein PilM [Bdellovibrionales bacterium] diamond 525 140 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29515701 29515701 PRJNA751877_P_NODE_29770_length_241_cov_0.916667_g29648_i0 PRJNA751877 29770 241 0.916667 2.20916747 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 147 8.08e-39   NR NUM60332.1 2026715 g29648 i0 91.3 1.99170124481328 80 7 99.6 0 2 241 971 1050 NUM60332.1 efflux RND transporter permease subunit [Pseudobdellovibrionaceae bacterium] diamond 480 147 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29673459 29673459 PRJNA751877_P_NODE_28470_length_243_cov_0.905882_g28348_i0 PRJNA751877 28470 243 0.905882 2.20129326 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 82.8 1.32e-16   NR HRO66702.1 2026715 g28348 i0 48.1 1.90123456790123 77 38 92.6 2 238 14 92 168 HRO66702.1 PQQ-dependent sugar dehydrogenase [Pseudobdellovibrionaceae bacterium] diamond 462 82.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29768371 29768371 PRJNA751877_P_NODE_26231_length_246_cov_0.890173_g26109_i0 PRJNA751877 26231 246 0.890173 2.18982558 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 55.8 9.1e-7   NR MFN8791216.1 2053517 g26109 i0 71.1 0.463414634146341 38 11 46.3 0 245 132 565 602 MFN8791216.1 tetratricopeptide repeat protein [Bdellovibrionales bacterium] diamond 114 55.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29831624 29831624 PRJNA751877_P_NODE_24111_length_249_cov_0.875000_g23989_i0 PRJNA751877 24111 249 0.875 2.17875 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 132 3.909999999999999e-35   NR HXH75518.1 2081706 g23989 i0 78.3 1.66265060240964 69 15 83.1 0 249 43 17 85 HXH75518.1 UDP-galactopyranose mutase [Bacteriovoracaceae bacterium] diamond 414 132 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29926553 29926553 PRJNA751877_P_NODE_17091_length_283_cov_2.042857_g16969_i0 PRJNA751877 17091 283 2.042857 5.78128531 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 139 2.15e-39   NR MFN8790341.1 2053517 g16969 i0 89.9 0.837455830388693 79 8 83.7 0 3 239 118 196 MFN8790341.1 hypothetical protein [Bdellovibrionales bacterium] diamond 237 139 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29999697 29999697 PRJNA751877_P_NODE_30011_length_241_cov_0.916667_g29889_i0 PRJNA751877 30011 241 0.916667 2.20916747 Bdellovibrio 958 Bacteria Bacteria 138 1.19e-37   NR WP_181605561.1 2748865 g29889 i0 81.3 1.99170124481328 80 15 99.6 0 2 241 67 146 WP_181605561.1 alpha/beta fold hydrolase [Bdellovibrio sp. KM01] diamond 480 139 0.992805755395683 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. KM01
30274232 30274232 PRJNA751877_P_NODE_16792_length_285_cov_1.452830_g16670_i0 PRJNA751877 16792 285 1.45283 4.1405655 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 84.3 4.38e-17   NR MFN8791679.1 2053517 g16670 i0 47.5 1.04210526315789 99 47 98.9 1 3 284 166 264 MFN8791679.1 hypothetical protein [Bdellovibrionales bacterium] diamond 297 84.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30432315 30432315 PRJNA751877_P_NODE_21853_length_253_cov_1.283333_g21731_i0 PRJNA751877 21853 253 1.283333 3.24683249 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 60.8 7.14e-9   NR MCB0368971.1 2053517 g21731 i0 45.8 0.853754940711462 72 38 85.4 1 217 2 21 91 MCB0368971.1 hypothetical protein [Bdellovibrionales bacterium] diamond 216 60.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30652915 30652915 PRJNA751877_P_NODE_27873_length_244_cov_0.900585_g27751_i0 PRJNA751877 27873 244 0.900585 2.1974274 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 88.6 2.79e-18   NR MBC7457256.1 2026715 g27751 i0 51.9 0.995901639344262 81 39 99.6 0 1 243 124 204 MBC7457256.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 243 88.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30747914 30747914 PRJNA751877_P_NODE_26394_length_246_cov_0.890173_g26272_i0 PRJNA751877 26394 246 0.890173 2.18982558 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 142 7.24e-38   NR MFN8790050.1 2053517 g26272 i0 78 1 82 18 100 0 1 246 51 132 MFN8790050.1 acyl-CoA dehydrogenase family protein [Bdellovibrionales bacterium] diamond 246 142 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31000736 31000736 PRJNA751877_P_NODE_27434_length_244_cov_1.801170_g27312_i0 PRJNA751877 27434 244 1.80117 4.3948548 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 144 4.62e-42   NR MCB0369869.1 2053517 g27312 i0 84 0.995901639344262 81 13 99.6 0 1 243 20 100 MCB0369869.1 uL15 family ribosomal protein [Bdellovibrionales bacterium] diamond 243 144 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31000737 31000737 PRJNA751877_P_NODE_28034_length_244_cov_0.900585_g27912_i0 PRJNA751877 28034 244 0.900585 2.1974274 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 149 1.44e-41   NR MFN8790556.1 2053517 g27912 i0 86.4 0.995901639344262 81 11 99.6 0 1 243 298 378 MFN8790556.1 signal recognition particle-docking protein FtsY [Bdellovibrionales bacterium] diamond 243 149 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31474989 31474989 PRJNA751877_P_NODE_24336_length_249_cov_0.875000_g24214_i0 PRJNA751877 24336 249 0.875 2.17875 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 116 1.52e-29   NR MES2855841.1 3034175 g24214 i0 62.2 0.987951807228916 82 31 98.8 0 2 247 41 122 MES2855841.1 DMT family transporter [Bdellovibrionota bacterium] diamond 246 116 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31854360 31854360 PRJNA751877_P_NODE_29657_length_241_cov_1.744048_g29535_i0 PRJNA751877 29657 241 1.744048 4.20315568 Bdellovibrio sp. ArHS 1569284 Bacteria Bacteria 89 1.05e-18   NR WP_041874894.1 1569284 g29535 i0 50.7 6.63485477178423 75 37 93.4 0 225 1 41 115 WP_041874894.1 CapA family protein [Bdellovibrio sp. ArHS] diamond 1599 89 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. ArHS
32234408 32234408 PRJNA751877_P_NODE_23578_length_250_cov_0.870056_g23456_i0 PRJNA751877 23578 250 0.870056 2.17514 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 62.8 1.76e-9   NR MFP5490308.1 3058048 g23456 i0 33.8 1.968 80 53 96 0 7 246 29 108 MFP5490308.1 hypothetical protein [Bacteriovoracia bacterium] diamond 492 62.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;