RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA751877" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 12 ✖

bioproject 1

  • PRJNA751877 · 12 ✖

analysis 1

  • diamond · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4554848 4554848 PRJNA751877_P_NODE_22124_length_251_cov_1.297753_g22002_i0 PRJNA751877 22124 251 1.297753 3.25736003 Chlorophyceae 3166 Plants Plants 103 9.06e-24   NR KAF5831075.1 3046 g22002 i0 59.5 4.01593625498008 84 33 99.2 1 251 3 76 159 KAF5831075.1 hypothetical protein DUNSADRAFT_13631 [Dunaliella salina] diamond 1008 103 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
18578179 18578179 PRJNA751877_P_NODE_2695_length_531_cov_4.222707_g2573_i0 PRJNA751877 2695 531 4.222707 22.42257417 Scenedesmus sp. PABB 2909984 Plants Plants 93.6 1.55e-18   NR KAF8054880.1 2742167 g2573 i0 52.8 3.67231638418079 106 48 59.9 1 518 201 1 104 KAF8054880.1 ARSA1 [Scenedesmus sp. PABB004] diamond 1950 93.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. PABB004
26767947 26767947 PRJNA751877_P_NODE_14261_length_305_cov_1.021552_g14139_i0 PRJNA751877 14261 305 1.021552 3.1157336 Monoraphidium neglectum 145388 Plants Plants 100 3.3299999999999998e-25   NR XP_013902846.1 145388 g14139 i0 68.1 0.678688524590164 69 21 66.9 1 300 97 3 71 XP_013902846.1 60S acidic ribosomal protein P1 [Monoraphidium neglectum] diamond 207 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
27283998 27283998 PRJNA751877_P_NODE_17423_length_281_cov_1.480769_g17301_i0 PRJNA751877 17423 281 1.480769 4.16096089 Eukaryota 2759 Plants Plants 118 1.64e-28   NR KAL4859025.1 3077 g17301 i0 74.7 13.5160142348754 79 14 84.3 1 1 237 58 130 KAL4859025.1 60S ribosomal protein L26-1 [Chlorella vulgaris] diamond 3798 118 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
28000563 28000563 PRJNA751877_P_NODE_21965_length_252_cov_1.424581_g21843_i0 PRJNA751877 21965 252 1.424581 3.58994412 Scenedesmus sp. PABB 2909984 Plants Plants 65.9 5.48e-12   NR KAF8060025.1 2742167 g21843 i0 54.9 0.607142857142857 51 23 60.7 0 19 171 25 75 KAF8060025.1 hypothetical protein HT031_004963 [Scenedesmus sp. PABB004] diamond 153 65.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. PABB004
28252884 28252884 PRJNA751877_P_NODE_15766_length_291_cov_1.766055_g15644_i0 PRJNA751877 15766 291 1.766055 5.13922005 Helicosporidium sp. ATCC 5 1907511 Plants Plants 50.4 8.77e-5   NR KDD76215.1 1291522 g15644 i0 37.2 0.969072164948454 94 51 94.8 3 6 281 45 132 KDD76215.1 hypothetical protein H632_c312p3 [Helicosporidium sp. ATCC 50920] diamond 282 50.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Helicosporidium Helicosporidium sp. ATCC 50920
28316148 28316148 PRJNA751877_P_NODE_5546_length_420_cov_1.775216_g5424_i0 PRJNA751877 5546 420 1.775216 7.4559072 Raphidocelis subcapitata 307507 Plants Plants 51.6 3.45e-5   NR GBG00239.1 307507 g5424 i0 34.1 1.4 129 77 90 4 412 35 8 131 GBG00239.1 60S ribosomal protein L28-like [Raphidocelis subcapitata] diamond 588 51.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata
29052378 29052378 PRJNA751877_P_NODE_21668_length_254_cov_1.657459_g21546_i0 PRJNA751877 21668 254 1.657459 4.20994586 Eukaryota 2759 Plants Plants 60.1 4.51e-9   NR XP_011398290.1 3075 g21546 i0 58.8 1.57086614173228 51 21 60.2 0 10 162 47 97 XP_011398290.1 putative RNA-binding protein, partial [Auxenochlorella protothecoides] diamond 399 60.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
29452432 29452432 PRJNA751877_P_NODE_24730_length_248_cov_0.880000_g24608_i0 PRJNA751877 24730 248 0.88 2.1824 Coccomyxa elongata 1965095 Plants Plants 150 7.38e-40   NR CAL8470668.1 1965095 g24608 i0 89 2.9758064516129 82 9 99.2 0 2 247 1324 1405 CAL8470668.1 g10210 [Coccomyxa elongata] diamond 738 150 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa elongata
30495238 30495238 PRJNA751877_P_NODE_24913_length_248_cov_0.880000_g24791_i0 PRJNA751877 24913 248 0.88 2.1824 Chlamydomonas reinhardtii 3055 Plants Plants 49.3 1.99e-4   NR XP_042918964.1 3055 g24791 i0 62.5 2.32258064516129 40 15 48.4 0 49 168 1379 1418 XP_042918964.1 uncharacterized protein CHLRE_12g552851v5 [Chlamydomonas reinhardtii] diamond 576 49.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
32085798 32085798 PRJNA751877_P_NODE_8218_length_370_cov_1.296296_g8096_i0 PRJNA751877 8218 370 1.296296 4.7962952 Eukaryota 2759 Plants Plants 152 5.31e-44   NR KAK9798542.1 706552 g8096 i0 63.9 6.91621621621622 122 43 98.9 1 366 1 7 127 KAK9798542.1 hypothetical protein WJX73_001310 [Symbiochloris irregularis] diamond 2559 152 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Symbiochloris Symbiochloris irregularis
32275923 32275923 PRJNA751877_P_NODE_21698_length_254_cov_1.276243_g21576_i0 PRJNA751877 21698 254 1.276243 3.24165722 Coccomyxa 41891 Plants Plants 50.8 5.96e-5   NR CAL5226881.1 1274662 g21576 i0 56.3 3.81496062992126 32 14 37.8 0 102 7 369 400 CAL5226881.1 g9754 [Coccomyxa viridis] diamond 969 50.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;