RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA751877" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA751877 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28032001 28032001 PRJNA751877_P_NODE_11865_length_328_cov_0.905882_g11743_i0 PRJNA751877 11865 328 0.905882 2.97129296 Methanosarcina sp. 2213 Archaea Archaea 68.9 4.4e-11   NR HET8686532.1 2213 g11743 i0 64.7 0.466463414634146 51 18 46.6 0 153 1 20 70 HET8686532.1 PD-(D/E)XK nuclease family protein [Methanosarcina sp.] diamond 153 68.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
28189548 28189548 PRJNA751877_P_NODE_16806_length_285_cov_1.424528_g16684_i0 PRJNA751877 16806 285 1.424528 4.0599048 Methanosarcina sp. 2213 Archaea Archaea 164 2.15e-45   NR HET8685214.1 2213 g16684 i0 87.4 1 95 12 100 0 285 1 238 332 HET8685214.1 nicotinate phosphoribosyltransferase [Methanosarcina sp.] diamond 285 164 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
30084244 30084244 PRJNA751877_P_NODE_20052_length_265_cov_1.265625_g19930_i0 PRJNA751877 20052 265 1.265625 3.35390625 Methanosarcina sp. 2213 Archaea Archaea 101 9.05e-23   NR HET8685406.1 2213 g19930 i0 57 0.973584905660377 86 37 97.4 0 263 6 197 282 HET8685406.1 hypothetical protein [Methanosarcina sp.] diamond 258 101 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;