RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA751877" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA751877 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8379864 8379864 PRJNA751877_P_NODE_587_length_916_cov_2.569395_g491_i0 PRJNA751877 587 916 2.569395 23.5356582 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 395 7.02e-135   NR XP_013760592.1 461836 g491 i0 66.3 0.982532751091703 300 97 97.6 2 905 12 43 340 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 900 395 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28379191 28379191 PRJNA751877_P_NODE_27346_length_245_cov_0.895349_g27224_i0 PRJNA751877 27346 245 0.895349 2.19360505 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 42 0.0433   NR XP_013753243.1 461836 g27224 i0 30.6 0.881632653061225 72 49 86.9 1 243 31 25 96 XP_013753243.1 uncharacterized protein AMSG_10809 [Thecamonas trahens ATCC 50062] diamond 216 42 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;