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contig_metadata

35 rows where analysis = "diamond", bioproject = "PRJNA749559" and tax_superkingdom = "Bacteria"

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tax_kingdom 2

tax_superkingdom 1

  • Bacteria · 35 ✖

bioproject 1

  • PRJNA749559 · 35 ✖

analysis 1

  • diamond · 35 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3277315 3277315 PRJNA749559_P_NODE_4243_length_208_cov_0.870748_g4173_i0 PRJNA749559 4243 208 0.870748 1.81115584 uncultured Brevundimonas sp. 213418 Bacteria Bacteria 119 2.24e-29   NR WP_295705670.1 213418 g4173 i0 92.6 0.980769230769231 68 5 98.1 0 3 206 564 631 WP_295705670.1 4-alpha-glucanotransferase [uncultured Brevundimonas sp.] diamond 204 119 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas uncultured Brevundimonas sp.
19051610 19051610 PRJNA749559_P_NODE_5055_length_201_cov_0.914286_g4985_i0 PRJNA749559 5055 201 0.914286 1.83771486 Paracoccus aeridis 1966466 Bacteria Bacteria 89.4 2.15e-19   NR WP_136649450.1 1966466 g4985 i0 98 0.746268656716418 50 1 74.6 0 52 201 1 50 WP_136649450.1 LysR family transcriptional regulator [Paracoccus aeridis] diamond 150 89.4 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus aeridis
19853025 19853025 PRJNA749559_P_NODE_4516_length_206_cov_0.882759_g4446_i0 PRJNA749559 4516 206 0.882759 1.81848354 Massilia sp. MP_M2 3071713 Bacteria Bacteria 130 5.579999999999999e-34   NR WP_343026797.1 3071713 g4446 i0 97.1 0.990291262135922 68 2 99 0 206 3 33 100 WP_343026797.1 hemolysin family protein [Massilia sp. MP_M2] diamond 204 130 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. MP_M2
27495198 27495198 PRJNA749559_P_NODE_5063_length_201_cov_0.914286_g4993_i0 PRJNA749559 5063 201 0.914286 1.83771486 Porphyromonas sp. 1924944 Bacteria Bacteria 135 2.26e-35   NR MBF1379052.1 1924944 g4993 i0 100 1.97014925373134 66 0 98.5 0 2 199 76 141 MBF1379052.1 penicillin-binding protein 2 [Porphyromonas sp.] diamond 396 135 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp.
27842276 27842276 PRJNA749559_P_NODE_3844_length_218_cov_1.630573_g3774_i0 PRJNA749559 3844 218 1.630573 3.55464914 Candidatus Tectimicrobiota bacterium 2528274 Bacteria Bacteria 75.5 5.59e-16   NR HEY5871562.1 2528274 g3774 i0 63.8 0.798165137614679 58 21 79.8 0 218 45 22 79 HEY5871562.1 hypothetical protein [Candidatus Tectimicrobiota bacterium] diamond 174 75.5 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Candidatus Tectimicrobiota         Candidatus Tectimicrobiota bacterium
27905353 27905353 PRJNA749559_P_NODE_4525_length_206_cov_0.882759_g4455_i0 PRJNA749559 4525 206 0.882759 1.81848354 Brevundimonas intermedia 74315 Bacteria Bacteria 43.5 0.0125   NR WP_167762577.1 74315 g4455 i0 55.8 1.25242718446602 43 19 62.6 0 146 18 1 43 WP_167762577.1 TonB-dependent receptor [Brevundimonas intermedia] diamond 258 43.5 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas intermedia
28000555 28000555 PRJNA749559_P_NODE_5145_length_194_cov_2.300752_g5075_i0 PRJNA749559 5145 194 2.300752 4.46345888 Pseudomonadota bacterium 1977087 Bacteria Bacteria 99.8 3.12e-25   NR MEL6702651.1 1977087 g5075 i0 71 0.958762886597938 62 18 95.9 0 191 6 18 79 MEL6702651.1 30S ribosomal protein S11 [Pseudomonadota bacterium] diamond 186 99.8 1 Bacteria   Pseudomonadati Pseudomonadota         Pseudomonadota bacterium
28347635 28347635 PRJNA749559_P_NODE_1366_length_387_cov_2.515337_g1296_i0 PRJNA749559 1366 387 2.515337 9.73435419 Enterobacter asburiae 61645 Bacteria Bacteria 49.7 3.25e-5   NR WP_236551201.1 61645 g1296 i0 55.6 0.348837209302326 45 15 31 1 124 5 16 60 WP_236551201.1 hypothetical protein, partial [Enterobacter asburiae] diamond 135 49.7 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter asburiae
28474032 28474032 PRJNA749559_P_NODE_4706_length_204_cov_0.895105_g4636_i0 PRJNA749559 4706 204 0.895105 1.8260142 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 61.6 3.08e-9   NR MDH7502297.1 2026799 g4636 i0 41.8 3.89705882352941 67 39 98.5 0 1 201 74 140 MDH7502297.1 slipin family protein [Verrucomicrobiota bacterium] diamond 795 61.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28947827 28947827 PRJNA749559_P_NODE_4588_length_205_cov_0.888889_g4518_i0 PRJNA749559 4588 205 0.888889 1.82222245 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 42 0.0405   NR MBL7213919.1 2049433 g4518 i0 50 0.673170731707317 46 21 64.4 1 42 173 69 114 MBL7213919.1 PAS domain S-box protein [Desulfobacteraceae bacterium] diamond 138 42 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
29011087 29011087 PRJNA749559_P_NODE_2928_length_253_cov_1.333333_g2858_i0 PRJNA749559 2928 253 1.333333 3.37333249 Psychromonas sp. PRT-SC 1884585 Bacteria Bacteria 41.2 0.0223   NR KPU83399.1 1527299 g2858 i0 71.4 0.49802371541502 42 12 49.8 0 2 127 30 71 KPU83399.1 hypothetical protein JI57_01495 [Psychromonas sp. PRT-SC03] diamond 126 41.2 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Psychromonadaceae Psychromonas Psychromonas sp. PRT-SC03
29074039 29074039 PRJNA749559_P_NODE_5168_length_192_cov_2.503817_g5098_i0 PRJNA749559 5168 192 2.503817 4.80732864 Chryseobacterium takakiae 1302685 Bacteria Bacteria 95.5 4.439999999999999e-23   NR WP_072886063.1 1302685 g5098 i0 71 0.96875 62 18 96.9 0 6 191 85 146 WP_072886063.1 hypothetical protein [Chryseobacterium takakiae] diamond 186 95.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium takakiae
29105592 29105592 PRJNA749559_P_NODE_2488_length_275_cov_1.766355_g2418_i0 PRJNA749559 2488 275 1.766355 4.85747625 Listeria monocytogenes 1639 Bacteria Bacteria 47.8 1.2e-4   NR WP_333734094.1 1639 g2418 i0 29.2 1.61454545454545 72 46 78.5 1 13 228 24 90 WP_333734094.1 hypothetical protein, partial [Listeria monocytogenes] diamond 444 47.8 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes
29420973 29420973 PRJNA749559_P_NODE_4729_length_204_cov_0.895105_g4659_i0 PRJNA749559 4729 204 0.895105 1.8260142 Kingella 32257 Bacteria Bacteria 119 6.849999999999998e-30   NR WP_238748364.1 32257 g4659 i0 98.5 0.985294117647059 67 1 98.5 0 202 2 150 216 WP_238748364.1 MULTISPECIES: sugar MFS transporter [Kingella] diamond 201 119 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Kingella  
29420974 29420974 PRJNA749559_P_NODE_5049_length_201_cov_0.914286_g4979_i0 PRJNA749559 5049 201 0.914286 1.83771486 Paracoccus litorisediminis 2006130 Bacteria Bacteria 62 3.4e-9   NR WP_394207910.1 2006130 g4979 i0 50 0.865671641791045 58 29 86.6 0 11 184 48 105 WP_394207910.1 TraM recognition domain-containing protein [Paracoccus litorisediminis] diamond 174 62 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus litorisediminis
30210526 30210526 PRJNA749559_P_NODE_4512_length_206_cov_0.882759_g4442_i0 PRJNA749559 4512 206 0.882759 1.81848354 Pirellulaceae bacterium 2699754 Bacteria Bacteria 41.2 0.0372   NR MFN7722928.1 2699754 g4442 i0 37.5 0.58252427184466 40 25 58.3 0 124 5 28 67 MFN7722928.1 hypothetical protein [Pirellulaceae bacterium] diamond 120 41.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae   Pirellulaceae bacterium
30274227 30274227 PRJNA749559_P_NODE_5072_length_201_cov_0.907143_g5002_i0 PRJNA749559 5072 201 0.907143 1.82335743 Neorhizobium sp. AL 9.2.2 2712894 Bacteria Bacteria 111 4.23e-27   NR WP_174196975.1 2712894 g5002 i0 96.6 0.880597014925373 59 2 88.1 0 200 24 384 442 WP_174196975.1 PLP-dependent aminotransferase family protein [Neorhizobium sp. AL 9.2.2] diamond 177 111 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Neorhizobium Neorhizobium sp. AL 9.2.2
30369195 30369195 PRJNA749559_P_NODE_1672_length_343_cov_0.872340_g1602_i0 PRJNA749559 1672 343 0.87234 2.9921262 Bryobacterales bacterium 2026791 Bacteria Bacteria 47.8 0.00191   NR MCC7500156.1 2026791 g1602 i0 35.4 0.690962099125364 79 37 57.7 3 69 266 337 414 MCC7500156.1 amino acid permease [Bryobacterales bacterium] diamond 237 47.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
30432306 30432306 PRJNA749559_P_NODE_4613_length_205_cov_0.888889_g4543_i0 PRJNA749559 4613 205 0.888889 1.82222245 Oscillospiraceae bacterium 2485925 Bacteria Bacteria 73.2 1.23e-14   NR MDR0839482.1 2485925 g4543 i0 54 0.921951219512195 63 29 92.2 0 189 1 26 88 MDR0839482.1 RidA family protein [Oscillospiraceae bacterium] diamond 189 73.2 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium
30526646 30526646 PRJNA749559_P_NODE_2253_length_290_cov_0.873362_g2183_i0 PRJNA749559 2253 290 0.873362 2.5327498 unclassified Streptomyces 2593676 Bacteria Bacteria 43.9 0.0253   NR WP_030027838.1 2593676 g2183 i0 41.5 0.848275862068966 82 38 80.7 5 37 270 447 522 WP_030027838.1 MULTISPECIES: alpha/beta hydrolase [unclassified Streptomyces] diamond 246 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
30652905 30652905 PRJNA749559_P_NODE_4553_length_205_cov_1.555556_g4483_i0 PRJNA749559 4553 205 1.555556 3.1888898 Candidatus Caldilinea saccharophila 3140701 Bacteria Bacteria 42.4 0.0225   NR MBK8799436.1 3140701 g4483 i0 76 0.365853658536585 25 6 36.6 0 88 162 12 36 MBK8799436.1 HNH endonuclease [Candidatus Caldilinea saccharophila] diamond 75 42.4 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Candidatus Caldilinea saccharophila
30937587 30937587 PRJNA749559_P_NODE_4694_length_204_cov_0.895105_g4624_i0 PRJNA749559 4694 204 0.895105 1.8260142 Micavibrio sp. 2024841 Bacteria Bacteria 88.2 2.17e-18   NR MFN3826112.1 2024841 g4624 i0 69.8 0.926470588235294 63 19 92.6 0 15 203 1458 1520 MFN3826112.1 calcium-binding protein [Micavibrio sp.] diamond 189 88.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
31126653 31126653 PRJNA749559_P_NODE_4955_length_202_cov_0.907801_g4885_i0 PRJNA749559 4955 202 0.907801 1.83375802 Rhizobium sp. CC-YZS 391 Bacteria Bacteria 60.8 3.38e-9   NR WP_323106240.1 3042153 g4885 i0 100 0.415841584158416 28 0 41.6 0 117 200 1 28 WP_323106240.1 YitT family protein [Rhizobium sp. CC-YZS058] diamond 84 60.8 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. CC-YZS058
31158249 31158249 PRJNA749559_P_NODE_3795_length_220_cov_1.610063_g3725_i0 PRJNA749559 3795 220 1.610063 3.5421386 Acidobacteriota bacterium 1978231 Bacteria Bacteria 65.5 2.65e-10   NR MBX3265733.1 1978231 g3725 i0 45.5 0.9 66 32 85.9 3 192 4 149 213 MBX3265733.1 hypothetical protein [Acidobacteriota bacterium] diamond 198 65.5 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31221588 31221588 PRJNA749559_P_NODE_5075_length_201_cov_0.857143_g5005_i0 PRJNA749559 5075 201 0.857143 1.72285743 Staphylococcus aureus 1280 Bacteria Bacteria 43.9 0.00174   NR WP_254613577.1 1280 g5005 i0 56.3 1.28358208955224 48 19 71.6 1 56 199 9 54 WP_254613577.1 hypothetical protein [Staphylococcus aureus] diamond 258 43.9 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
31358390 31358390 PRJNA749559_P_NODE_4636_length_205_cov_0.888889_g4566_i0 PRJNA749559 4636 205 0.888889 1.82222245 Moraxellaceae 468 Bacteria Bacteria 124 2.3699999999999998e-32   NR WP_219332801.1 34062 g4566 i0 86.8 1.9609756097561 68 9 99.5 0 204 1 242 309 WP_219332801.1 glycosyltransferase [Moraxella osloensis] diamond 402 125 0.992 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Faucicola Faucicola osloensis
31443199 31443199 PRJNA749559_P_NODE_1476_length_370_cov_1.546926_g1406_i0 PRJNA749559 1476 370 1.546926 5.7236262 Desulfomicrobium escambiense 29503 Bacteria Bacteria 45.8 0.0126   NR WP_156902618.1 29503 g1406 i0 31.7 0.997297297297297 123 69 87.6 2 343 20 139 261 WP_156902618.1 STT3 domain-containing protein [Desulfomicrobium escambiense] diamond 369 45.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium escambiense
31579846 31579846 PRJNA749559_P_NODE_1916_length_316_cov_5.533333_g1846_i0 PRJNA749559 1916 316 5.533333 17.48533228 Bacteria 2 Bacteria Bacteria 99.8 7.67e-25   NR WP_077633843.1 562 g1846 i0 65.1 1.68987341772152 83 29 78.8 0 4 252 11 93 WP_077633843.1 hypothetical protein, partial [Escherichia coli] diamond 534 100 0.998 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli
31706190 31706190 PRJNA749559_P_NODE_4397_length_207_cov_0.876712_g4327_i0 PRJNA749559 4397 207 0.876712 1.81479384 Paracoccaceae 31989 Bacteria Bacteria 99.8 1.94e-22   NR WP_194886561.1 265 g4327 i0 92.7 3.98550724637681 55 4 79.7 0 167 3 5 59 WP_194886561.1 MULTISPECIES: PhoX family protein [Paracoccus] diamond 825 100 0.998 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus  
31759472 31759472 PRJNA749559_P_NODE_4197_length_209_cov_0.864865_g4127_i0 PRJNA749559 4197 209 0.864865 1.80756785 Paracoccus aeridis 1966466 Bacteria Bacteria 132 7.52e-36   NR WP_136652656.1 1966466 g4127 i0 100 0.990430622009569 69 0 99 0 207 1 75 143 WP_136652656.1 LysR family transcriptional regulator [Paracoccus aeridis] diamond 207 132 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus aeridis
32044275 32044275 PRJNA749559_P_NODE_4358_length_207_cov_0.876712_g4288_i0 PRJNA749559 4358 207 0.876712 1.81479384 Rhizobium sp. Leaf3 391 Bacteria Bacteria 135 5.65e-35   NR WP_062456708.1 1736330 g4288 i0 100 1 69 0 100 0 207 1 192 260 WP_062456708.1 DUF3971 domain-containing protein [Rhizobium sp. Leaf306] diamond 207 135 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Leaf306
32202500 32202500 PRJNA749559_P_NODE_4258_length_208_cov_0.870748_g4188_i0 PRJNA749559 4258 208 0.870748 1.81115584 Devosia sp. 1871048 Bacteria Bacteria 97.4 3.3e-22   NR WP_295415036.1 1871048 g4188 i0 71.6 2.92788461538462 67 19 96.6 0 1 201 205 271 WP_295415036.1 ABC transporter ATP-binding protein [Devosia sp.] diamond 609 97.4 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp.
32360919 32360919 PRJNA749559_P_NODE_4739_length_204_cov_0.895105_g4669_i0 PRJNA749559 4739 204 0.895105 1.8260142 Paracoccus marcusii 59779 Bacteria Bacteria 91.3 3.4e-20   NR WP_373947273.1 59779 g4669 i0 75 0.941176470588235 64 16 94.1 0 202 11 232 295 WP_373947273.1 EamA family transporter [Paracoccus marcusii] diamond 192 91.3 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus marcusii
32739646 32739646 PRJNA749559_P_NODE_2500_length_275_cov_0.967290_g2430_i0 PRJNA749559 2500 275 0.96729 2.6600475 Pseudomonas syringae group genomosp. 7 251699 Bacteria Bacteria 44.3 0.0152   NR WP_395588599.1 251699 g2430 i0 50 2.07272727272727 40 19 43.6 1 40 159 294 332 WP_395588599.1 hypothetical protein, partial [Pseudomonas syringae group genomosp. 7] diamond 570 44.3 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 7
32802392 32802392 PRJNA749559_P_NODE_4920_length_202_cov_0.907801_g4850_i0 PRJNA749559 4920 202 0.907801 1.83375802 Phycisphaerae bacterium 2026778 Bacteria Bacteria 77.8 9.75e-15   NR MFN0138167.1 2026778 g4850 i0 51.6 2.88118811881188 64 30 93.6 1 192 4 605 668 MFN0138167.1 aconitate hydratase AcnA [Phycisphaerae bacterium] diamond 582 77.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;