RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA745923" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA745923 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18576309 18576309 PRJNA745923_S_NODE_18655_length_228_cov_3.027027_g18323_i0 PRJNA745923 18655 228 3.027027 6.90162156 Oscillospiraceae bacterium 2485925 Bacteria Bacteria 145 1.6499999999999999e-38   NR MBR5873559.1 2485925 g18323 i0 97.3 2.96052631578947 75 2 98.7 0 226 2 359 433 MBR5873559.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Oscillospiraceae bacterium] diamond 675 145 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium
26609358 26609358 PRJNA745923_S_NODE_40521_length_150_cov_0.897196_g40189_i0 PRJNA745923 40521 150 0.897196 1.345794 Oscillospiraceae bacterium 2485925 Bacteria Bacteria 76.6 7.32e-15   NR MBR4989582.1 2485925 g40189 i0 91.1 1.8 45 4 90 0 148 14 293 337 MBR4989582.1 ABC transporter permease [Oscillospiraceae bacterium] diamond 270 76.6 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium
32044261 32044261 PRJNA745923_S_NODE_18558_length_229_cov_2.322581_g18226_i0 PRJNA745923 18558 229 2.322581 5.31871049 Lachnospiraceae bacterium 1898203 Bacteria Bacteria 144 2.12e-39   NR RKW55286.1 1898203 g18226 i0 97.3 0.982532751091703 75 2 98.3 0 227 3 27 101 RKW55286.1 MAG: pyrimidine-nucleoside phosphorylase [Lachnospiraceae bacterium] diamond 225 144 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae   Lachnospiraceae bacterium
32360913 32360913 PRJNA745923_S_NODE_27659_length_182_cov_1.920863_g27327_i0 PRJNA745923 27659 182 1.920863 3.49597066 [Clostridium] innocuum 1522 Bacteria Bacteria 42.4 0.0222   NR WP_233106945.1 1522 g27327 i0 41.5 0.675824175824176 41 24 67.6 0 47 169 69 109 WP_233106945.1 isoaspartyl peptidase/L-asparaginase [[Clostridium] innocuum] diamond 123 42.4 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium [Clostridium] innocuum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;