RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA745923" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 3 ✖

bioproject 1

  • PRJNA745923 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1198943 1198943 PRJNA745923_S_NODE_41_length_11369_cov_57.353346_g24_i1 PRJNA745923 41 11369 57.353346 6520.50190674 Tanacetum cinerariifolium 118510 Plants Plants 1025 0   NR GEZ83759.1 118510 g24 i1 52.3 0.433019614741842 1029 430 26.5 13 6972 9983 52 1044 GEZ83759.1 hypothetical protein [Tanacetum cinerariifolium] diamond 4923 1025 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Tanacetum Tanacetum cinerariifolium
19050708 19050708 PRJNA745923_S_NODE_35_length_12554_cov_75.931260_g24_i0 PRJNA745923 35 12554 75.93126 9532.4103804 Tanacetum cinerariifolium 118510 Plants Plants 1025 0   NR GEZ83759.1 118510 g24 i0 52.3 0.392145929584196 1029 430 24 13 7623 10634 52 1044 GEZ83759.1 hypothetical protein [Tanacetum cinerariifolium] diamond 4923 1025 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Tanacetum Tanacetum cinerariifolium
29799954 29799954 PRJNA745923_S_NODE_27151_length_184_cov_1.702128_g26819_i0 PRJNA745923 27151 184 1.702128 3.13191552 Liquidambar formosana 63359 Plants Plants 74.7 6.58e-16   NR KAK9269863.1 63359 g26819 i0 97.1 0.554347826086957 34 1 55.4 0 3 104 43 76 KAK9269863.1 hypothetical protein L1049_025436 [Liquidambar formosana] diamond 102 74.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Saxifragales Altingiaceae Liquidambar Liquidambar formosana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;