RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where analysis = "diamond", bioproject = "PRJNA745553" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 18 ✖

tax_clade 1

bioproject 1

  • PRJNA745553 · 18 ✖

analysis 1

  • diamond · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2000028 2000028 PRJNA745553_S_NODE_10422_length_376_cov_3.052805_g10227_i0 PRJNA745553 10422 376 3.052805 11.4785468 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 84.7 1.61e-17   NR KAF1313269.1 82926 g10227 i0 74.2 1.97872340425532 62 15 48.7 1 321 139 132 193 KAF1313269.1 Ubiquitin-60s ribosomal protein l40, partial [Globisporangium splendens] diamond 744 84.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
12203529 12203529 PRJNA745553_S_NODE_14210_length_326_cov_6.430830_g14015_i0 PRJNA745553 14210 326 6.43083 20.9645058 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 96.7 1.9e-21   NR KAG7389019.1 109152 g14015 i0 82.5 16.1687116564417 63 10 57.1 1 207 22 246 308 KAG7389019.1 hypothetical protein PHYBOEH_007632 [Phytophthora boehmeriae] diamond 5271 96.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora boehmeriae
18576106 18576106 PRJNA745553_S_NODE_6535_length_458_cov_4.740260_g6341_i0 PRJNA745553 6535 458 4.74026 21.7103908 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 124 1.3799999999999998e-31   NR RQM26635.1 112090 g6341 i0 66.3 3.10480349344978 95 31 61.6 1 455 174 202 296 RQM26635.1 hypothetical protein B5M09_003301 [Aphanomyces astaci] diamond 1422 124 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
23677324 23677324 PRJNA745553_S_NODE_28859_length_226_cov_6.777778_g28664_i0 PRJNA745553 28859 226 6.777778 15.31777828 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 99 2.3399999999999994e-23   NR KUF97731.1 4792 g28664 i0 72.3 13.6858407079646 65 18 86.3 0 204 10 184 248 KUF97731.1 hypothetical protein AM588_10010154 [Phytophthora nicotianae] diamond 3093 100 0.99 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
26672557 26672557 PRJNA745553_S_NODE_1461_length_708_cov_3.233071_g1322_i0 PRJNA745553 1461 708 3.233071 22.89014268 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 106 1.93e-24   NR TMW64278.1 41045 g1322 i0 43.7 1.73305084745763 135 73 56.8 3 707 306 34 166 TMW64278.1 hypothetical protein Poli38472_012900 [Pythium oligandrum] diamond 1227 106 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
26873178 26873178 PRJNA745553_S_NODE_13901_length_330_cov_1.525292_g13706_i0 PRJNA745553 13901 330 1.525292 5.0334636 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 58.9 2.07e-7   NR CCI44615.1 65357 g13706 i0 47.8 3.33636363636364 46 24 41.8 0 329 192 534 579 CCI44615.1 unnamed protein product [Albugo candida] diamond 1101 59.3 0.993254637436762 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
27252295 27252295 PRJNA745553_S_NODE_30263_length_204_cov_5.877863_g30068_i0 PRJNA745553 30263 204 5.877863 11.99084052 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 64.7 4.04e-10   NR CAI5734659.1 162125 g30068 i0 82.9 3.57352941176471 35 6 51.5 0 186 82 425 459 CAI5734659.1 unnamed protein product [Hyaloperonospora brassicae] diamond 729 64.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
27400534 27400534 PRJNA745553_S_NODE_15663_length_311_cov_4.743697_g15468_i0 PRJNA745553 15663 311 4.743697 14.75289767 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0323   NR OQR90287.1 1202772 g15468 i0 34.2 0.704180064308682 73 38 61.7 2 68 259 581 652 OQR90287.1 ABC transporter [Achlya hypogyna] diamond 219 43.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
27653149 27653149 PRJNA745553_S_NODE_16964_length_300_cov_1.286344_g16769_i0 PRJNA745553 16964 300 1.286344 3.859032 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 73.2 7.88e-13   NR DAZ95991.1 4803 g16769 i0 58 1.1 50 21 50 0 149 298 66 115 DAZ95991.1 TPA: hypothetical protein N0F65_009292 [Lagenidium giganteum] diamond 330 73.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
28136721 28136721 PRJNA745553_S_NODE_2185_length_640_cov_1.298060_g2011_i0 PRJNA745553 2185 640 1.29806 8.307584 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 80.5 3.95e-14   NR RLN47569.1 325452 g2011 i0 29.5 2.64375 193 110 83.9 7 1 537 95 275 RLN47569.1 hypothetical protein BBJ29_005932 [Phytophthora kernoviae] diamond 1692 81.3 0.990159901599016 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora kernoviae
28189527 28189527 PRJNA745553_S_NODE_14866_length_319_cov_4.865854_g14671_i0 PRJNA745553 14866 319 4.865854 15.52207426 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 70.9 9.13e-13   NR KAF1334350.1 82926 g14671 i0 64.7 1.86206896551724 51 18 48 0 26 178 107 157 KAF1334350.1 Translation elongation factor if5a, partial [Globisporangium splendens] diamond 594 70.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
28325876 28325876 PRJNA745553_S_NODE_18586_length_286_cov_5.769953_g18391_i0 PRJNA745553 18586 286 5.769953 16.50206558 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 92.4 1.32e-21   NR KAG7389430.1 109152 g18391 i0 63.9 4.44755244755245 61 22 64 0 261 79 76 136 KAG7389430.1 hypothetical protein PHYBOEH_007446 [Phytophthora boehmeriae] diamond 1272 92.8 0.995689655172414 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora boehmeriae
30125674 30125674 PRJNA745553_S_NODE_2512_length_617_cov_6.101103_g2334_i0 PRJNA745553 2512 617 6.101103 37.64380551 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 98.6 6.63e-20   NR POM75838.1 4796 g2334 i0 45.2 11.3776337115073 115 63 55.9 0 121 465 621 735 POM75838.1 TRAF3-interacting protein [Phytophthora palmivora] diamond 7020 98.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora
30189012 30189012 PRJNA745553_S_NODE_15512_length_313_cov_1.925000_g15317_i0 PRJNA745553 15512 313 1.925 6.02525 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 130 1.42e-32   NR KUF95685.1 4792 g15317 i0 54.7 19.0255591054313 106 45 98.7 1 311 3 523 628 KUF95685.1 hypothetical protein AM588_10009356 [Phytophthora nicotianae] diamond 5955 131 0.99236641221374 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
30842747 30842747 PRJNA745553_S_NODE_28734_length_227_cov_5.915584_g28539_i0 PRJNA745553 28734 227 5.915584 13.42837568 Phytophthora cactorum 29920 SAR_Eukaryotes SAR_Eukaryotes 62.4 5.59e-10   NR KAF1780337.1 29920 g28539 i0 46.9 0.845814977973568 64 34 84.6 0 207 16 93 156 KAF1780337.1 ClpP/crotonase-like domain [Phytophthora cactorum] diamond 192 62.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
30852557 30852557 PRJNA745553_S_NODE_29614_length_216_cov_4.174825_g29419_i0 PRJNA745553 29614 216 4.174825 9.017622 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 97.4 1.4500000000000002e-21   NR KAF0689425.1 120398 g29419 i0 68.7 3.625 67 21 93.1 0 9 209 308 374 KAF0689425.1 hypothetical protein As57867_019067 [Aphanomyces stellatus] diamond 783 97.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
32297742 32297742 PRJNA745553_S_NODE_19039_length_283_cov_3.657143_g18844_i0 PRJNA745553 19039 283 3.657143 10.34971469 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 78.2 1.52e-14   NR TYZ64046.1 1485010 g18844 i0 64.4 0.625441696113074 59 21 62.5 0 87 263 320 378 TYZ64046.1 hypothetical protein PybrP1_011904 [[Pythium] brassicae (nom. inval.)] diamond 177 78.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
32465718 32465718 PRJNA745553_S_NODE_20659_length_272_cov_2.708543_g20464_i0 PRJNA745553 20659 272 2.708543 7.36723696 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 97.8 2.33e-21   NR KAJ8546679.1 4785 g20464 i0 50.6 23.2058823529412 89 43 98.2 1 1 267 951 1038 KAJ8546679.1 hypothetical protein ON010_g11556 [Phytophthora cinnamomi] diamond 6312 97.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;