RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA745553" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA745553 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27369162 27369162 PRJNA745553_S_NODE_2203_length_638_cov_2.233628_g2029_i0 PRJNA745553 2203 638 2.233628 14.25054664 Paramecium octaurelia 43137 SAR_Eukaryotes SAR_Eukaryotes 146 1.24e-36   NR CAD8187874.1 43137 g2029 i0 42.4 2.83542319749216 198 108 92.2 3 628 41 458 651 CAD8187874.1 unnamed protein product [Paramecium octaurelia] diamond 1809 146 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium octaurelia
29904887 29904887 PRJNA745553_S_NODE_28571_length_229_cov_2.089744_g28376_i0 PRJNA745553 28571 229 2.089744 4.78551376 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 122 1.3e-33   NR CDW72918.1 5949 g28376 i0 71.1 14.9082969432314 76 22 99.6 0 228 1 18 93 CDW72918.1 protein mago nashi [Stylonychia lemnae] diamond 3414 123 0.991869918699187 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
29957921 29957921 PRJNA745553_S_NODE_11411_length_362_cov_8.238754_g11216_i0 PRJNA745553 11411 362 8.238754 29.82428948 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 55.5 1.39e-6   NR CDW86774.1 5949 g11216 i0 28.6 0.812154696132597 98 69 80.4 1 3 293 73 170 CDW86774.1 UNKNOWN [Stylonychia lemnae] diamond 294 55.5 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
30495210 30495210 PRJNA745553_S_NODE_17513_length_295_cov_1.765766_g17318_i0 PRJNA745553 17513 295 1.765766 5.2090097 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 83.2 2.45e-16   NR CAG9319529.1 1481888 g17318 i0 65.4 1.05762711864407 52 18 52.9 0 293 138 307 358 CAG9319529.1 unnamed protein product [Blepharisma stoltei] diamond 312 83.2 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;