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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA745553" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA745553 · 13 ✖

analysis 1

  • diamond · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22401776 22401776 PRJNA745553_S_NODE_2998_length_588_cov_9.669903_g2815_i0 PRJNA745553 2998 588 9.669903 56.85902964 Metazoa 33208 Chordata Chordata 151 2.28e-38   NR KAI5935658.1 9974 g2815 i0 57.4 12.7857142857143 148 60 74 1 550 116 927 1074 KAI5935658.1 Neuronal PAS domain-containing protein 2 [Manis javanica] diamond 7518 151 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis javanica
28252854 28252854 PRJNA745553_S_NODE_22666_length_260_cov_1.647059_g22471_i0 PRJNA745553 22666 260 1.647059 4.2823534 Euleptes europaea 460621 Chordata Chordata 48.9 3.08e-4   NR XP_056720257.1 460621 g22471 i0 69 0.334615384615385 29 9 33.5 0 260 174 643 671 XP_056720257.1 ADP-ribosylhydrolase ARH1-like [Euleptes europaea] diamond 87 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Sphaerodactylidae Euleptes Euleptes europaea
28357438 28357438 PRJNA745553_S_NODE_6326_length_463_cov_5.915385_g6132_i0 PRJNA745553 6326 463 5.915385 27.38823255 root 1 Root_unresolved Root_unresolved 167 1.14e-44   NR 7YSJ_A 10116 g6132 i0 65.9 58.7041036717063 132 45 85.5 0 67 462 842 973 7YSJ_A Chain A, Glutamate receptor [Rattus norvegicus] diamond 27180 168 0.994047619047619 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
28452472 28452472 PRJNA745553_S_NODE_17946_length_291_cov_4.357798_g17751_i0 PRJNA745553 17946 291 4.357798 12.68119218 Mammalia 40674 Chordata Chordata 85.5 2.04e-18   NR XP_054937577.1 9755 g17751 i0 75.9 24.9484536082474 54 13 55.7 0 67 228 124 177 XP_054937577.1 uncharacterized protein, partial [Physeter macrocephalus] diamond 7260 86.3 0.990730011587486 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Physeter Physeter macrocephalus
28663486 28663486 PRJNA745553_S_NODE_19727_length_278_cov_6.321951_g19532_i0 PRJNA745553 19727 278 6.321951 17.57502378 Branchiostoma belcheri 7741 Chordata Chordata 52.8 7.87e-6   NR KAI8520055.1 7741 g19532 i0 64.5 0.334532374100719 31 11 33.5 0 30 122 154 184 KAI8520055.1 Peptidyl-prolyl cis-trans isomerase cyp8 [Branchiostoma belcheri] diamond 93 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
28673394 28673394 PRJNA745553_S_NODE_14167_length_327_cov_2.342520_g13972_i0 PRJNA745553 14167 327 2.34252 7.6600404 Chordata 7711 Chordata Chordata 72.8 3.67e-13   NR AAH99273.1 8355 g13972 i0 52.4 16.1926605504587 63 30 57.8 0 287 99 134 196 AAH99273.1 Unknown (protein for IMAGE:6932755), partial [Xenopus laevis] diamond 5295 73.2 0.994535519125683 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
29178670 29178670 PRJNA745553_S_NODE_24669_length_249_cov_5.647727_g24474_i0 PRJNA745553 24669 249 5.647727 14.06284023 Anura 8342 Chordata Chordata 53.5 6.33e-6   NR XP_018418199.1 125878 g24474 i0 55.3 2.8433734939759 47 19 54.2 1 231 97 449 495 XP_018418199.1 PREDICTED: CWF19-like protein 1 isoform X3 [Nanorana parkeri] diamond 708 53.9 0.992578849721707 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dicroglossidae Nanorana Nanorana parkeri
29873212 29873212 PRJNA745553_S_NODE_4531_length_521_cov_4.370536_g4341_i0 PRJNA745553 4531 521 4.370536 22.77049256 root 1 Root_unresolved Root_unresolved 211 6.4e-60   NR 7YSJ_A 10116 g4341 i0 69.3 255.869481765835 153 47 88.1 0 17 475 842 994 7YSJ_A Chain A, Glutamate receptor [Rattus norvegicus] diamond 133308 213 0.990610328638498 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
29926533 29926533 PRJNA745553_S_NODE_24991_length_248_cov_2.388571_g24796_i0 PRJNA745553 24991 248 2.3885710000000002 5.92365608 Geotrypetes seraphini 260995 Chordata Chordata 66.6 4.74e-11   NR XP_033777160.1 260995 g24796 i0 34.6 5.05645161290323 81 48 98 1 5 247 90 165 XP_033777160.1 esterase OVCA2 [Geotrypetes seraphini] diamond 1254 66.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Dermophiidae Geotrypetes Geotrypetes seraphini
31221565 31221565 PRJNA745553_S_NODE_10315_length_377_cov_11.000000_g10120_i0 PRJNA745553 10315 377 11 41.47 Physeter macrocephalus 9755 Chordata Chordata 43.5 0.0218   NR XP_028341699.1 9755 g10120 i0 34.1 0.652519893899204 82 49 65.3 1 359 114 29 105 XP_028341699.1 ras and Rab interactor 3, partial [Physeter macrocephalus] diamond 246 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Physeter Physeter macrocephalus
31453330 31453330 PRJNA745553_S_NODE_4976_length_505_cov_3.608796_g4782_i0 PRJNA745553 4976 505 3.608796 18.2244198 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 51.2 6.19e-4   NR XP_019618423.1 7741 g4782 i0 40 1.64554455445545 45 27 26.7 0 474 340 1620 1664 XP_019618423.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC109465508 [Branchiostoma belcheri] diamond 831 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
32560719 32560719 PRJNA745553_S_NODE_24639_length_249_cov_16.034091_g24444_i0 PRJNA745553 24639 249 16.034091 39.92488659 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 84.7 2.35e-19   NR XP_043549936.1 36176 g24444 i0 72.2 14.289156626506 54 15 65.1 0 2 163 33 86 XP_043549936.1 acyl-CoA-binding protein [Chiloscyllium plagiosum] diamond 3558 85.1 0.995299647473561 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium plagiosum
32802374 32802374 PRJNA745553_S_NODE_4680_length_515_cov_4.486425_g4489_i0 PRJNA745553 4680 515 4.486425 23.10508875 Ornithorhynchus anatinus 9258 Chordata Chordata 64.7 7.34e-9   NR XP_028912553.1 9258 g4489 i0 62.5 3.4252427184466 48 18 28 0 330 187 206 253 XP_028912553.1 endonuclease V [Ornithorhynchus anatinus] diamond 1764 64.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;