RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA745553" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA745553 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26672565 26672565 PRJNA745553_S_NODE_25621_length_245_cov_7.174419_g25426_i0 PRJNA745553 25621 245 7.174419 17.57732655 Helicobacter canadensis MIT 98-5491 537970 Bacteria Bacteria 52 9.03e-7   NR EFR49424.1 537970 g25426 i0 70.3 0.453061224489796 37 11 45.3 0 144 34 11 47 EFR49424.1 LOW QUALITY PROTEIN: hypothetical protein HCMG_01598, partial [Helicobacter canadensis MIT 98-5491] diamond 111 52 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter canadensis
28578692 28578692 PRJNA745553_S_NODE_20467_length_273_cov_4.670000_g20272_i0 PRJNA745553 20467 273 4.67 12.7491 root 1 Root_unresolved Root_unresolved 58.5 1.1e-8   NR KJD20933.1 32022 g20272 i0 46.7 4.04395604395604 60 32 65.9 0 41 220 48 107 KJD20933.1 hypothetical protein TM01_09170, partial [Campylobacter jejuni subsp. jejuni] diamond 1104 58.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
29326338 29326338 PRJNA745553_S_NODE_27529_length_236_cov_2.392638_g27334_i0 PRJNA745553 27529 236 2.392638 5.64662568 Campylobacterales bacterium 2268180 Bacteria Bacteria 43.1 0.024   NR MDD3467525.1 2268180 g27334 i0 30.6 0.788135593220339 62 37 71.2 1 210 43 119 180 MDD3467525.1 glycosyltransferase [Campylobacterales bacterium] diamond 186 43.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales     Campylobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;