RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA745553" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA745553 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12203910 12203910 PRJNA745553_S_NODE_7090_length_444_cov_14.110512_g6896_i0 PRJNA745553 7090 444 14.110512 62.65067328 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 88.2 6.72e-20   NR XP_016654546.1 31271 g6896 i0 71.2 4.37837837837838 59 17 39.9 0 106 282 1 59 XP_016654546.1 60S ribosomal protein L29, putative [Plasmodium chabaudi chabaudi] diamond 1944 88.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
31073841 31073841 PRJNA745553_S_NODE_25475_length_246_cov_2.271676_g25280_i0 PRJNA745553 25475 246 2.271676 5.58832296 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 62 5.37e-9   NR KAI4839932.1 5824 g25280 i0 68.4 0.926829268292683 38 12 46.3 0 245 132 26 63 KAI4839932.1 hypothetical protein MKS88_001284 [Plasmodium brasilianum] diamond 228 62 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;