RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA745553" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA745553 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31949171 31949171 PRJNA745553_S_NODE_10777_length_371_cov_2.298658_g10582_i0 PRJNA745553 10777 371 2.298658 8.52802118 Methanomassiliicoccales archaeon 1906667 Archaea Archaea 55.8 4.05e-6   NR MBC7109063.1 1906667 g10582 i0 39 0.994609164420485 123 53 97.8 6 370 8 546 648 MBC7109063.1 hypothetical protein [Methanomassiliicoccales archaeon] diamond 369 55.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     Methanomassiliicoccales archaeon
32654618 32654618 PRJNA745553_S_NODE_18240_length_289_cov_3.236111_g18045_i0 PRJNA745553 18240 289 3.236111 9.35236079 Haloferacaceae 1644056 Archaea Archaea 59.7 2.34e-8   NR WP_256394472.1 869891 g18045 i0 48.4 2.65743944636678 64 32 66.4 1 1 192 134 196 WP_256394472.1 ribonuclease HI [Halohasta litorea] diamond 768 59.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halohasta Halohasta litorea
32739636 32739636 PRJNA745553_S_NODE_4400_length_525_cov_6.962389_g4210_i0 PRJNA745553 4400 525 6.962389 36.55254225 Methanofastidiosum sp. 2666341 Archaea Archaea 103 6.029999999999999e-24   NR HNU62663.1 2666341 g4210 i0 96.2 0.297142857142857 52 2 29.7 0 151 306 139 190 HNU62663.1 hypothetical protein [Methanofastidiosum sp.] diamond 156 103 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Candidatus Methanofastidiosia Candidatus Methanofastidiosales Candidatus Methanofastidiosaceae Candidatus Methanofastidiosum Methanofastidiosum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;