RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA743294" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA743294 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26809577 26809577 PRJNA743294_P_NODE_47681_length_251_cov_1.752809_g47225_i0 PRJNA743294 47681 251 1.752809 4.39955059 Bacteria 2 Bacteria Bacteria 52.8 1.25e-5   NR MCA9313600.1 2026720 g47225 i0 39.4 4.1593625498008 66 34 71.7 1 29 208 886 951 MCA9313600.1 hypothetical protein [Candidatus Saccharibacteria bacterium] diamond 1044 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
28568434 28568434 PRJNA743294_P_NODE_36447_length_280_cov_1.033816_g35991_i0 PRJNA743294 36447 280 1.033816 2.8946848 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 47.4 0.00145   NR HEY5667537.1 2973664 g35991 i0 42.6 1.00714285714286 94 36 83.6 5 279 46 1537 1628 HEY5667537.1 hypothetical protein [Candidatus Saccharimonadales bacterium] diamond 282 47.4 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
29200148 29200148 PRJNA743294_P_NODE_16309_length_399_cov_1.279141_g15853_i0 PRJNA743294 16309 399 1.279141 5.10377259 Candidatus Saccharibacteria bacterium 32-49-12 1970479 Bacteria Bacteria 131 9.47e-36   NR OYX40884.1 1970479 g15853 i0 48.9 2.02255639097744 133 64 98.5 3 6 398 12 142 OYX40884.1 MAG: hypothetical protein B7Y94_05960 [Candidatus Saccharibacteria bacterium 32-49-12] diamond 807 131 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 32-49-12
30369005 30369005 PRJNA743294_P_NODE_24032_length_335_cov_1.599237_g23576_i0 PRJNA743294 24032 335 1.599237 5.35744395 Candidatus Saccharibacteria bacterium 49-2 1895829 Bacteria Bacteria 51.6 4.1e-5   NR OJU87784.1 1895829 g23576 i0 36 0.770149253731343 86 49 71.6 1 29 268 12 97 OJU87784.1 MAG: hypothetical protein BGO17_02250 [Candidatus Saccharibacteria bacterium 49-20] diamond 258 51.6 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 49-20
30473573 30473573 PRJNA743294_P_NODE_31193_length_298_cov_5.653333_g30737_i0 PRJNA743294 31193 298 5.653333 16.84693234 Pseudomonadati 3379134 Bacteria Bacteria 45.1 0.0106   NR MCR5572232.1 2026720 g30737 i0 34.8 2.45637583892617 66 40 63.4 1 293 105 536 601 MCR5572232.1 molecular chaperone DnaK [Candidatus Saccharibacteria bacterium] diamond 732 45.4 0.993392070484582 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
32265892 32265892 PRJNA743294_P_NODE_52198_length_246_cov_1.803468_g51742_i0 PRJNA743294 52198 246 1.803468 4.43653128 Candidatus Saccharibacteria bacterium 32-49-12 1970479 Bacteria Bacteria 68.2 2.19e-11   NR OYX40883.1 1970479 g51742 i0 44.9 0.951219512195122 78 38 95.1 2 2 235 202 274 OYX40883.1 MAG: hypothetical protein B7Y94_05955, partial [Candidatus Saccharibacteria bacterium 32-49-12] diamond 234 68.2 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 32-49-12

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;