RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA743294" and tax_phylum = "Candidatus Lloydiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Lloydiibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA743294 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28357421 28357421 PRJNA743294_P_NODE_6346_length_616_cov_4.753223_g5896_i0 PRJNA743294 6346 616 4.753223 29.27985368 Bacteria 2 Bacteria Bacteria 168 2.53e-47   NR OGZ15837.1 1798669 g5896 i0 60.3 2.83928571428571 146 55 71.1 3 612 175 198 340 OGZ15837.1 MAG: arginine kinase [Candidatus Lloydbacteria bacterium RIFCSPLOWO2_12_FULL_51_9] diamond 1749 168 1 Bacteria Bacteria candidate phyla   Candidatus Lloydiibacteriota         Candidatus Lloydbacteria bacterium RIFCSPLOWO2_12_FULL_51_9
30084103 30084103 PRJNA743294_P_NODE_45332_length_255_cov_1.384615_g44876_i0 PRJNA743294 45332 255 1.384615 3.53076825 Candidatus Lloydbacteria bacterium RIFCSPHIGHO2_ 2750077 Bacteria Bacteria 41.2 0.0409   NR OGZ06127.1 1798658 g44876 i0 45.9 0.435294117647059 37 17 43.5 1 64 174 57 90 OGZ06127.1 MAG: hypothetical protein A2845_01785 [Candidatus Lloydbacteria bacterium RIFCSPHIGHO2_01_FULL_49_22] diamond 111 41.2 1 Bacteria Bacteria candidate phyla   Candidatus Lloydiibacteriota         Candidatus Lloydbacteria bacterium RIFCSPHIGHO2_01_FULL_49_22

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;