RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA743294" and tax_phylum = "Balneolota"

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tax_superkingdom 1

tax_phylum 1

  • Balneolota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA743294 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21124716 21124716 PRJNA743294_P_NODE_48557_length_250_cov_1.762712_g48101_i0 PRJNA743294 48557 250 1.762712 4.40678 Gracilimonas halophila 1834464 Bacteria Bacteria 121 1.45e-30   NR WP_390298284.1 1834464 g48101 i0 73 0.888 74 20 88.8 0 249 28 361 434 WP_390298284.1 fumarylacetoacetase [Gracilimonas halophila] diamond 222 121 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Gracilimonas Gracilimonas halophila
30905810 30905810 PRJNA743294_P_NODE_14154_length_425_cov_2.602273_g13698_i0 PRJNA743294 14154 425 2.602273 11.05966025 Balneola sp. 2024824 Bacteria Bacteria 70.9 2.71e-12   NR MBU94013.1 2024824 g13698 i0 41.8 0.557647058823529 79 44 54.4 1 318 88 28 106 MBU94013.1 hypothetical protein [Balneola sp.] diamond 237 70.9 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Balneola Balneola sp.
32370776 32370776 PRJNA743294_P_NODE_45479_length_254_cov_3.535912_g45023_i0 PRJNA743294 45479 254 3.535912 8.98121648 Pseudomonadati 3379134 Bacteria Bacteria 62 5.11e-9   NR WP_395085675.1 1974203 g45023 i0 80.6 6.59055118110236 31 6 36.6 0 96 188 202 232 WP_395085675.1 cysteine synthase CysM [Gracilimonas sp.] diamond 1674 62.4 0.993589743589744 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Gracilimonas Gracilimonas sp.
32550620 32550620 PRJNA743294_P_NODE_10659_length_485_cov_3.514563_g10203_i0 PRJNA743294 10659 485 3.514563 17.04563055 Balneola sp. 2024824 Bacteria Bacteria 49.7 4.54e-4   NR MBU94013.1 2024824 g10203 i0 48.9 0.290721649484536 47 24 29.1 0 10 150 32 78 MBU94013.1 hypothetical protein [Balneola sp.] diamond 141 49.7 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Balneola Balneola sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;