RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA743294" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA743294 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28979156 28979156 PRJNA743294_P_NODE_58548_length_232_cov_2.698113_g58092_i0 PRJNA743294 58548 232 2.698113 6.25962216 Methanopyri archaeon 2599940 Archaea Archaea 72.4 1.15e-12   NR NPB02643.1 2599940 g58092 i0 48.1 0.995689655172414 77 40 99.6 0 2 232 394 470 NPB02643.1 ribosome biogenesis/translation initiation ATPase RLI [Methanopyri archaeon] diamond 231 72.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanopyri       Methanopyri archaeon
31538154 31538154 PRJNA743294_P_NODE_4676_length_704_cov_2.076070_g4254_i0 PRJNA743294 4676 704 2.07607 14.6155328 Methanosphaera sp. 2666342 Archaea Archaea 57 2.24e-5   NR MEE3325473.1 2666342 g4254 i0 27.2 1.51704545454545 173 100 69.5 8 702 214 532 688 MEE3325473.1 hypothetical protein [Methanosphaera sp.] diamond 1068 57 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;