RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA738523" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA738523 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27936999 27936999 PRJNA738523_P_NODE_15565_length_242_cov_0.911243_g15494_i0 PRJNA738523 15565 242 0.911243 2.20520806 Deinococcus antarcticus 1298767 Bacteria Bacteria 115 3.35e-28   NR WP_380075372.1 1298767 g15494 i0 100 0.706611570247934 57 0 70.7 0 72 242 1 57 WP_380075372.1 pyruvate kinase [Deinococcus antarcticus] diamond 171 115 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus
29525884 29525884 PRJNA738523_P_NODE_15050_length_243_cov_0.905882_g14979_i0 PRJNA738523 15050 243 0.905882 2.20129326 Deinococcus 1298 Bacteria Bacteria 148 3.5399999999999987e-41   NR WP_386845800.1 536443 g14979 i0 90.1 3 81 8 100 0 1 243 46 126 WP_386845800.1 ABC transporter substrate-binding protein [Deinococcus taklimakanensis] diamond 729 149 0.993288590604027 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus taklimakanensis
31000447 31000447 PRJNA738523_P_NODE_5634_length_305_cov_1.327586_g5563_i0 PRJNA738523 5634 305 1.327586 4.0491373 Pseudothermotoga sp. 2033661 Bacteria Bacteria 50.8 1.14e-5   NR MCS7175943.1 2033661 g5563 i0 44.3 0.6 61 32 60 1 2 184 33 91 MCS7175943.1 thiamine-binding protein [Pseudothermotoga sp.] diamond 183 50.8 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Pseudothermotoga Pseudothermotoga sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;