RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA737474" and tax_phylum = "Candidatus Colwelliibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Colwelliibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA737474 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32987626 32987626 PRJNA737474d_S_NODE_6883_length_598_cov_1.411429_g6319_i0 PRJNA737474 6883 598 1.411429 8.44034542 Candidatus Colwellbacteria bacterium 2750074 Bacteria Bacteria 162 2.92e-47   NR MDD4931421.1 2750074 g6319 i0 79.8 0.496655518394649 99 20 49.7 0 422 126 41 139 MDD4931421.1 hypothetical protein [Candidatus Colwellbacteria bacterium] diamond 297 162 1 Bacteria Bacteria candidate phyla   Candidatus Colwelliibacteriota         Candidatus Colwellbacteria bacterium
33074233 33074233 PRJNA737474g_S_NODE_30861_length_517_cov_1.511261_g29584_i0 PRJNA737474 30861 517 1.511261 7.81321937 Candidatus Colwellbacteria bacterium 2750074 Bacteria Bacteria 45.4 0.0435   NR MDD4931771.1 2750074 g29584 i0 21 0.690522243713733 119 92 69.1 1 42 398 100 216 MDD4931771.1 protein phosphatase 2C domain-containing protein [Candidatus Colwellbacteria bacterium] diamond 357 45.4 1 Bacteria Bacteria candidate phyla   Candidatus Colwelliibacteriota         Candidatus Colwellbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;