RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA734348" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA734348 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11400534 11400534 PRJNA734348_P_NODE_110569_length_246_cov_1.774566_g109871_i0 PRJNA734348 110569 246 1.774566 4.36543236 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 119 5.98e-29   NR MFA7482693.1 3107663 g109871 i0 77.8 0.98780487804878 81 18 98.8 0 3 245 592 672 MFA7482693.1 response regulator [Vulcanimicrobiota bacterium] diamond 243 119 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
27368867 27368867 PRJNA734348_P_NODE_75103_length_265_cov_1.354167_g74405_i0 PRJNA734348 75103 265 1.354167 3.58854255 Candidatus Baltobacteraceae bacterium 3107660 Bacteria Bacteria 129 2.31e-32   NR HLI96883.1 2952909 g74405 i0 65.1 1.94716981132075 86 30 97.4 0 263 6 548 633 HLI96883.1 phosphoenolpyruvate synthase [Candidatus Baltobacteraceae bacterium] diamond 516 129 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae   Candidatus Baltobacteraceae bacterium
28505173 28505173 PRJNA734348_P_NODE_79407_length_261_cov_1.627660_g78709_i0 PRJNA734348 79407 261 1.62766 4.2481926 Candidatus Cybelea sp. 2952917 Bacteria Bacteria 50.1 3.31e-5   NR HEV3091873.1 2952917 g78709 i0 36.8 1 87 47 95.4 3 2 250 54 136 HEV3091873.1 hypothetical protein [Candidatus Cybelea sp.] diamond 261 50.1 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Cybelea Candidatus Cybelea sp.
28537013 28537013 PRJNA734348_P_NODE_52307_length_287_cov_2.817757_g51610_i0 PRJNA734348 52307 287 2.817757 8.08696259 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 81.3 1.1e-15   NR MFA7481575.1 3107663 g51610 i0 50 1.71428571428571 82 41 85.7 0 35 280 9 90 MFA7481575.1 3-dehydroquinate synthase [Vulcanimicrobiota bacterium] diamond 492 81.3 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
30242079 30242079 PRJNA734348_P_NODE_110592_length_246_cov_1.774566_g109894_i0 PRJNA734348 110592 246 1.774566 4.36543236 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 94.7 2.95e-21   NR MFA5503843.1 3107663 g109894 i0 57.3 1.96341463414634 82 34 98.8 1 244 2 139 220 MFA5503843.1 hypothetical protein [Vulcanimicrobiota bacterium] diamond 483 94.7 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
30684191 30684191 PRJNA734348_P_NODE_113593_length_246_cov_0.890173_g112895_i0 PRJNA734348 113593 246 0.890173 2.18982558 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 73.9 2.9e-13   NR MFA7482532.1 3107663 g112895 i0 75 0.536585365853659 44 11 53.7 0 242 111 312 355 MFA7482532.1 AmmeMemoRadiSam system protein B [Vulcanimicrobiota bacterium] diamond 132 73.9 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;