RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA734348" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA734348 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7097934 7097934 PRJNA734348_P_NODE_97026_length_250_cov_0.870056_g96328_i0 PRJNA734348 97026 250 0.870056 2.17514 Mycoplasma sp. CAG:472 1262904 Bacteria Bacteria 170 1.7199999999999998e-47   NR CDE38000.1 1262904 g96328 i0 100 0.996 83 0 99.6 0 249 1 568 650 CDE38000.1 putative uncharacterized protein [Mycoplasma sp. CAG:472] diamond 249 170 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. CAG:472
28252509 28252509 PRJNA734348_P_NODE_101346_length_249_cov_0.875000_g100648_i0 PRJNA734348 101346 249 0.875 2.17875 Mycoplasmopsis arginini 2094 Bacteria Bacteria 65.1 7.56e-11   NR MDI3349079.1 2094 g100648 i0 46.5 0.855421686746988 71 38 85.5 0 3 215 15 85 MDI3349079.1 hypothetical protein [Mycoplasmopsis arginini] diamond 213 65.1 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
28378890 28378890 PRJNA734348_S_NODE_1906_length_251_cov_0.865169_g1897_i0 PRJNA734348 1906 251 0.865169 2.17157419 Mycoplasma wenyonii 65123 Bacteria Bacteria 154 5.09e-45   NR WP_112665825.1 65123 g1897 i0 94 0.99203187250996006 83 5 99.2 0 2 250 71 153 WP_112665825.1 hypothetical protein [Mycoplasma wenyonii] diamond 249 154 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
30968905 30968905 PRJNA734348_S_NODE_2114_length_244_cov_0.900585_g2105_i0 PRJNA734348 2114 244 0.900585 2.1974274 Mycoplasma wenyonii 65123 Bacteria Bacteria 92.8 9.11e-20   NR WP_220084652.1 65123 g2105 i0 100 0.540983606557377 44 0 54.1 0 2 133 56 99 WP_220084652.1 class I tRNA ligase family protein [Mycoplasma wenyonii] diamond 132 92.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;