RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA734348" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA734348 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29452091 29452091 PRJNA734348_P_NODE_37510_length_319_cov_1.654472_g36814_i0 PRJNA734348 37510 319 1.654472 5.27776568 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 102 2.02e-25   NR XP_004348720.1 1257118 g36814 i0 59.3 0.761755485893417 81 33 76.2 0 2 244 48 128 XP_004348720.1 actin binding protein [Acanthamoeba castellanii str. Neff] diamond 243 102 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29862877 29862877 PRJNA734348_P_NODE_99631_length_249_cov_0.875000_g98933_i0 PRJNA734348 99631 249 0.875 2.17875 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 66.2 2.11e-10   NR XP_004335867.1 1257118 g98933 i0 48.1 0.975903614457831 81 38 96.4 3 2 241 138 215 XP_004335867.1 guanylyl cyclase [Acanthamoeba castellanii str. Neff] diamond 243 66.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32297476 32297476 PRJNA734348_P_NODE_76239_length_264_cov_1.319372_g75541_i0 PRJNA734348 76239 264 1.319372 3.48314208 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 105 5.0599999999999996e-24   NR XP_004335836.1 1257118 g75541 i0 59.5 0.897727272727273 79 28 85.2 1 262 38 36 114 XP_004335836.1 uncharacterized protein ACA1_076760 [Acanthamoeba castellanii str. Neff] diamond 237 105 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;