RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA734348" and tax_phylum = "Candidatus Collieribacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Collieribacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA734348 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27242004 27242004 PRJNA734348_P_NODE_49343_length_290_cov_3.566820_g48646_i0 PRJNA734348 49343 290 3.56682 10.343778 Candidatus Collierbacteria bacterium 2053540 Bacteria Bacteria 87.8 9.89e-18   NR MBI2310320.1 2053540 g48646 i0 52.9 0.9 87 36 84.8 1 32 277 1907 1993 MBI2310320.1 hypothetical protein [Candidatus Collierbacteria bacterium] diamond 261 87.8 1 Bacteria Bacteria candidate phyla   Candidatus Collieribacteriota         Candidatus Collierbacteria bacterium
27463391 27463391 PRJNA734348_P_NODE_109103_length_247_cov_0.885057_g108405_i0 PRJNA734348 109103 247 0.885057 2.18609079 Candidatus Collierbacteria bacterium GW2 2053540 Bacteria Bacteria 53.1 5.69e-6   NR KKT73259.1 1618384 g108405 i0 74.1 0.983805668016194 27 7 32.8 0 91 11 1 27 KKT73259.1 MAG: intein-containing protein [Candidatus Collierbacteria bacterium GW2011_GWB1_44_6] diamond 243 53.1 1 Bacteria Bacteria candidate phyla   Candidatus Collieribacteriota         Candidatus Collierbacteria bacterium GW2011_GWB1_44_6

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;