RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA734348" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA734348 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27378936 27378936 PRJNA734348_P_NODE_94703_length_250_cov_2.576271_g94005_i0 PRJNA734348 94703 250 2.576271 6.4406775 Myxococcota 2818505 Bacteria Bacteria 124 1.7800000000000002e-33   NR OGR12512.1 1797899 g94005 i0 75.6 3.924 82 19 98.4 1 250 5 136 216 OGR12512.1 MAG: tRNA (guanosine(37)-N1)-methyltransferase TrmD [Deltaproteobacteria bacterium RIFOXYB12_FULL_58_9] diamond 981 124 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYB12_FULL_58_9
29452067 29452067 PRJNA734348_P_NODE_114350_length_245_cov_2.162791_g113652_i0 PRJNA734348 114350 245 2.162791 5.29883795 Candidatus Zymogenaceae bacterium 2844909 Bacteria Bacteria 131 1.04e-33   NR MBN2223499.1 2844909 g113652 i0 78.8 0.979591836734694 80 17 98 0 1 240 494 573 MBN2223499.1 NAD+ synthase [Candidatus Zymogenaceae bacterium] diamond 240 131 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Candidatus Zymogeniales Candidatus Zymogenaceae   Candidatus Zymogenaceae bacterium
32455480 32455480 PRJNA734348_P_NODE_149939_length_199_cov_4.206349_g149241_i0 PRJNA734348 149939 199 4.206349 8.37063451 Lujinxingiaceae bacterium 2946527 Bacteria Bacteria 76.3 1.83e-14   NR MBA2661193.1 2946527 g149241 i0 57.6 1.77889447236181 59 25 88.9 0 178 2 1 59 MBA2661193.1 hypothetical protein [Lujinxingiaceae bacterium] diamond 354 76.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae   Lujinxingiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;