RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA734313" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA734313 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17294767 17294767 PRJNA734313_S_NODE_7194_length_343_cov_1.128378_g7081_i0 PRJNA734313 7194 343 1.128378 3.87033654 Magnoliopsida 3398 Plants Plants 152 1.08e-42   NR KAJ0212394.1 4236 g7081 i0 67.6 26.3002915451895 102 33 89.2 0 317 12 237 338 KAJ0212394.1 hypothetical protein LSAT_V11C400222320 [Lactuca sativa] diamond 9021 152 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Lactuca Lactuca sativa
29147230 29147230 PRJNA734313_S_NODE_17809_length_222_cov_1.177143_g17696_i0 PRJNA734313 17809 222 1.177143 2.61325746 root 1 Root_unresolved Root_unresolved 53.5 4.29e-6   NR XP_058114505.1 86752 g17696 i0 48.4 1.77027027027027 62 28 78.4 1 3 176 178 239 XP_058114505.1 ankyrin repeat-containing protein BDA1-like [Magnolia sinica] diamond 393 53.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Magnoliales Magnoliaceae Magnolia Magnolia sinica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;